Wall clock time and date at job start Mon Mar 30 2020 01:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38225 * 120.41904 * 2 1 4 4 N 1.31847 * 120.76447 * 180.02562 * 3 2 1 5 5 C 1.31891 * 121.72615 * 359.97438 * 4 3 2 6 6 C 1.38185 * 120.76240 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.41381 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.46707 * 159.99963 * 7 6 5 9 9 O 1.42902 * 109.47123 * 40.00354 * 7 6 5 10 10 C 1.50697 * 109.47339 * 279.99929 * 7 6 5 11 11 H 1.08005 * 119.99546 * 0.02562 * 10 7 6 12 12 C 1.37871 * 119.99985 * 180.02562 * 10 7 6 13 13 N 1.31511 * 120.00319 * 359.97438 * 12 10 7 14 14 Si 1.86807 * 120.00024 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.46991 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47239 * 119.99547 * 14 12 10 17 17 H 1.48497 * 109.46900 * 239.99738 * 14 12 10 18 18 C 1.38627 * 120.41932 * 180.02562 * 2 1 3 19 19 H 1.09002 * 109.46856 * 269.97137 * 1 2 3 20 20 H 1.08997 * 109.47345 * 29.97125 * 1 2 3 21 21 H 1.09007 * 109.46897 * 149.97807 * 1 2 3 22 22 H 1.07996 * 119.61319 * 0.05090 * 3 2 1 23 23 H 1.07996 * 119.61758 * 180.28019 * 5 4 3 24 24 H 0.96696 * 113.99518 * 299.99705 * 9 7 6 25 25 H 0.96996 * 120.00381 * 180.02562 * 13 12 10 26 26 H 1.08007 * 120.79013 * 359.95066 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0823 -0.0005 6 6 3.5948 -1.1471 -0.0005 7 6 4.4027 -2.4193 -0.0012 8 1 3.7825 -3.2437 0.3504 9 8 5.5296 -2.2683 0.8645 10 6 4.8798 -2.7108 -1.4006 11 1 4.6238 -2.0415 -2.2087 12 6 5.6429 -3.8318 -1.6493 13 7 5.9549 -4.6465 -0.6652 14 14 6.2348 -4.1928 -3.3839 15 1 5.7524 -3.1304 -4.3027 16 1 7.7192 -4.2279 -3.4032 17 1 5.7027 -5.5071 -3.8250 18 6 2.2090 -1.1954 -0.0005 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3633 -0.8899 -0.5142 22 1 1.6675 2.1276 0.0008 23 1 5.3046 0.1285 0.0036 24 1 6.1266 -1.5510 0.6113 25 1 6.4921 -5.4349 -0.8401 26 1 1.6888 -2.1420 -0.0002 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535854792.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:18 Heat of formation + Delta-G solvation = -50.795473 kcal Electronic energy + Delta-G solvation = -11629.574998 eV Core-core repulsion = 9478.812808 eV Total energy + Delta-G solvation = -2150.762190 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.15244 -37.73963 -34.46646 -34.28704 -32.97946 -28.76903 -28.05842 -25.32281 -23.94768 -21.73178 -19.16994 -18.00335 -17.40316 -16.76968 -16.66152 -15.26163 -15.01789 -14.64204 -14.39292 -13.89058 -13.61857 -13.45864 -13.27368 -12.98092 -12.87338 -12.60713 -12.13462 -11.51563 -10.84056 -10.66823 -10.31903 -10.14351 -9.58986 -8.19117 -6.46820 0.27599 0.42958 1.38084 1.40118 1.52174 2.35836 2.93278 3.06804 3.60928 3.96936 4.00194 4.12792 4.22875 4.33044 4.54949 4.76836 4.86893 4.95528 5.14306 5.25826 5.40465 5.58370 5.72614 5.87949 5.98495 6.62401 7.08312 7.24529 7.41386 8.84590 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.048423 B = 0.010314 C = 0.009916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.098763 B = 2714.206566 C = 2823.177047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.132 4.132 3 C 0.068 3.932 4 N -0.499 5.499 5 C 0.077 3.923 6 C -0.137 4.137 7 C 0.266 3.734 8 H 0.038 0.962 9 O -0.575 6.575 10 C -0.576 4.576 11 H 0.052 0.948 12 C 0.031 3.969 13 N -0.896 5.896 14 Si 0.962 3.038 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.275 1.275 18 C -0.096 4.096 19 H 0.085 0.915 20 H 0.090 0.910 21 H 0.071 0.929 22 H 0.184 0.816 23 H 0.151 0.849 24 H 0.359 0.641 25 H 0.265 0.735 26 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.560 7.827 -0.404 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.134 4.134 3 C -0.090 4.090 4 N -0.207 5.207 5 C -0.079 4.079 6 C -0.139 4.139 7 C 0.208 3.792 8 H 0.055 0.945 9 O -0.380 6.380 10 C -0.614 4.614 11 H 0.071 0.929 12 C -0.172 4.172 13 N -0.532 5.532 14 Si 0.787 3.213 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.122 4.122 19 H 0.104 0.896 20 H 0.109 0.891 21 H 0.090 0.910 22 H 0.201 0.799 23 H 0.168 0.832 24 H 0.205 0.795 25 H 0.074 0.926 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.309 7.963 -0.036 11.508 hybrid contribution 0.447 -0.986 -1.031 1.495 sum -7.861 6.977 -1.067 10.565 Atomic orbital electron populations 1.20764 0.87335 1.04168 1.03609 1.21269 0.99413 0.93004 0.99723 1.23132 0.89552 0.98716 0.97556 1.67622 1.09662 1.30969 1.12473 1.22405 1.00438 0.87283 0.97770 1.22058 0.96137 0.98463 0.97268 1.18172 0.83488 0.88230 0.89273 0.94462 1.86544 1.38543 1.57510 1.55373 1.21796 1.35499 1.09739 0.94353 0.92939 1.25871 0.95225 0.95163 1.00982 1.70192 1.36497 1.13377 1.33175 0.85465 0.78196 0.78214 0.79446 1.19266 1.20096 1.20069 1.21569 0.93180 0.99378 0.98082 0.89620 0.89127 0.91040 0.79865 0.83217 0.79512 0.92589 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 10.04 71.24 0.72 -1.27 15 2 C -0.13 -3.95 5.90 -19.77 -0.12 -4.06 15 3 C 0.07 2.07 10.86 84.69 0.92 2.99 15 4 N -0.50 -18.54 10.36 -195.85 -2.03 -20.57 15 5 C 0.08 3.13 10.49 84.67 0.89 4.02 15 6 C -0.14 -5.99 4.92 -19.77 -0.10 -6.08 15 7 C 0.27 13.83 3.08 29.10 0.09 13.92 15 8 H 0.04 2.13 8.03 -2.39 -0.02 2.11 15 9 O -0.57 -30.18 12.59 -148.98 -1.88 -32.05 15 10 C -0.58 -31.75 8.74 25.60 0.22 -31.53 15 11 H 0.05 2.89 7.74 -2.91 -0.02 2.87 15 12 C 0.03 1.70 5.40 84.65 0.46 2.16 15 13 N -0.90 -52.71 12.84 21.44 0.28 -52.43 15 14 Si 0.96 43.11 29.54 68.60 2.03 45.13 15 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 16 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 17 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 18 C -0.10 -3.59 9.51 22.46 0.21 -3.38 15 19 H 0.09 1.44 8.14 -2.39 -0.02 1.42 15 20 H 0.09 1.35 8.09 -2.39 -0.02 1.33 15 21 H 0.07 1.36 8.10 -2.38 -0.02 1.34 15 22 H 0.18 4.01 8.06 -2.91 -0.02 3.98 15 23 H 0.15 5.84 6.80 -2.91 -0.02 5.82 15 24 H 0.36 16.48 7.52 -74.06 -0.56 15.92 15 25 H 0.27 14.63 8.31 -92.71 -0.77 13.86 15 26 H 0.13 4.69 8.06 -2.91 -0.02 4.67 15 Total: -1.00 -65.79 234.43 2.32 -63.48 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.63 Total: 19.68 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 3.29 Total: -23.24 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.75 Total: -73.00 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.88 Total: -32.05 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -65.79 2.32 -63.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535854792.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.682 kcal (2) G-P(sol) polarization free energy of solvation -65.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds