Wall clock time and date at job start Mon Mar 30 2020 01:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38665 * 120.78685 * 2 1 4 4 C 1.38185 * 119.16301 * 179.97438 * 3 2 1 5 5 N 1.31891 * 120.76240 * 359.97438 * 4 3 2 6 6 C 1.31847 * 121.72615 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.62015 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46554 * 65.01818 * 7 6 5 9 9 O 1.42899 * 109.47378 * 185.01918 * 7 6 5 10 10 C 1.50694 * 109.46870 * 305.02385 * 7 6 5 11 11 H 1.07997 * 120.00625 * 359.97438 * 10 7 6 12 12 C 1.37884 * 119.99726 * 179.97438 * 10 7 6 13 13 N 1.31511 * 120.00045 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00027 * 179.97438 * 12 10 7 15 15 H 1.48504 * 109.46916 * 59.99681 * 14 12 10 16 16 H 1.48498 * 109.47007 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47354 * 300.00084 * 14 12 10 18 18 C 1.38225 * 120.76447 * 359.97438 * 6 5 4 19 19 H 1.09001 * 109.46917 * 89.99844 * 1 2 3 20 20 H 1.08997 * 109.47019 * 209.99733 * 1 2 3 21 21 H 1.09000 * 109.47320 * 329.99930 * 1 2 3 22 22 H 1.07999 * 120.42301 * 0.02562 * 3 2 1 23 23 H 1.07996 * 119.61944 * 179.72296 * 4 3 2 24 24 H 0.96701 * 113.99589 * 60.00082 * 9 7 6 25 25 H 0.96998 * 120.00676 * 179.97438 * 13 12 10 26 26 H 1.08009 * 120.42134 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0001 0.0016 6 6 3.5984 -1.1516 0.0016 7 6 4.3801 -2.4400 0.0022 8 1 4.9392 -2.5252 0.9340 9 8 3.4798 -3.5435 -0.1157 10 6 5.3382 -2.4468 -1.1609 11 1 5.3769 -1.6028 -1.8336 12 6 6.1654 -3.5306 -1.3664 13 7 6.1186 -4.5582 -0.5470 14 14 7.3525 -3.5394 -2.8086 15 1 8.2877 -2.3922 -2.6869 16 1 8.1237 -4.8084 -2.8072 17 1 6.5904 -3.4241 -4.0779 18 6 2.2167 -1.1909 0.0011 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.6967 2.1377 0.0004 23 1 4.1582 2.0754 -0.0040 24 1 2.9481 -3.5327 -0.9234 25 1 6.7002 -5.3208 -0.6917 26 1 1.6965 -2.1374 0.0015 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535855102.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:13 Heat of formation + Delta-G solvation = -47.883581 kcal Electronic energy + Delta-G solvation = -11651.663914 eV Core-core repulsion = 9501.027992 eV Total energy + Delta-G solvation = -2150.635921 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.11251 -37.63189 -34.79893 -34.29369 -32.14856 -28.93748 -28.53322 -25.37765 -23.63198 -21.76159 -19.17181 -17.51463 -17.28516 -16.68797 -16.43677 -15.62600 -15.44867 -14.71524 -14.60518 -13.67896 -13.57055 -13.31810 -13.23177 -12.87831 -12.79983 -12.37955 -12.05527 -11.43763 -10.83078 -10.66189 -10.28462 -9.98807 -9.69689 -8.15568 -6.39828 0.34114 0.48902 1.38880 1.41885 1.50288 2.38572 2.99656 3.08907 3.59439 3.90632 3.97131 4.14418 4.38134 4.46442 4.69202 4.80600 4.85412 4.96485 5.11145 5.26034 5.50525 5.52908 5.65041 5.96208 6.02990 6.66663 7.20084 7.32085 7.48919 8.88866 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.054051 B = 0.010530 C = 0.009533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.909035 B = 2658.352301 C = 2936.344334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.048 4.048 3 C -0.187 4.187 4 C 0.082 3.918 5 N -0.517 5.517 6 C 0.104 3.896 7 C 0.272 3.728 8 H 0.034 0.966 9 O -0.566 6.566 10 C -0.561 4.561 11 H 0.050 0.950 12 C 0.026 3.974 13 N -0.900 5.900 14 Si 0.964 3.036 15 H -0.273 1.273 16 H -0.278 1.278 17 H -0.267 1.267 18 C -0.188 4.188 19 H 0.087 0.913 20 H 0.073 0.927 21 H 0.091 0.909 22 H 0.169 0.831 23 H 0.176 0.824 24 H 0.360 0.640 25 H 0.264 0.736 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.271 9.709 -0.902 14.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 C -0.206 4.206 4 C -0.075 4.075 5 N -0.228 5.228 6 C -0.032 4.032 7 C 0.213 3.787 8 H 0.052 0.948 9 O -0.370 6.370 10 C -0.599 4.599 11 H 0.068 0.932 12 C -0.176 4.176 13 N -0.537 5.537 14 Si 0.788 3.212 15 H -0.198 1.198 16 H -0.203 1.203 17 H -0.192 1.192 18 C -0.208 4.208 19 H 0.106 0.894 20 H 0.092 0.908 21 H 0.110 0.890 22 H 0.186 0.814 23 H 0.193 0.807 24 H 0.206 0.794 25 H 0.073 0.927 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.037 9.344 -0.262 13.001 hybrid contribution -0.051 -0.147 -1.002 1.014 sum -9.088 9.197 -1.264 12.991 Atomic orbital electron populations 1.20853 0.87425 1.04294 1.03783 1.20769 0.98601 0.92170 0.94065 1.22318 0.94947 0.99694 1.03687 1.23333 0.93231 0.95946 0.94976 1.67404 1.42896 0.98918 1.13574 1.22506 0.92703 0.95004 0.93002 1.17924 0.85890 0.78694 0.96163 0.94810 1.86529 1.56488 1.49216 1.44746 1.21610 1.22213 1.03340 1.12782 0.93221 1.25893 0.97976 0.94773 0.98996 1.70180 1.38548 1.06946 1.38021 0.85544 0.78746 0.77472 0.79389 1.19795 1.20312 1.19189 1.21965 0.94239 1.00267 1.04339 0.89432 0.90795 0.89001 0.81350 0.80738 0.79392 0.92691 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 10.06 71.24 0.72 -1.32 15 2 C -0.05 -1.40 5.92 -19.67 -0.12 -1.52 15 3 C -0.19 -5.11 9.82 22.36 0.22 -4.89 15 4 C 0.08 2.79 11.18 84.67 0.95 3.73 15 5 N -0.52 -23.44 9.96 -183.88 -1.83 -25.27 15 6 C 0.10 4.90 6.12 42.56 0.26 5.16 15 7 C 0.27 15.05 3.31 29.10 0.10 15.15 15 8 H 0.03 2.14 8.14 -2.39 -0.02 2.12 15 9 O -0.57 -29.89 11.61 -148.98 -1.73 -31.62 15 10 C -0.56 -32.97 8.56 25.60 0.22 -32.75 15 11 H 0.05 2.95 7.68 -2.91 -0.02 2.92 15 12 C 0.03 1.50 5.40 84.66 0.46 1.96 15 13 N -0.90 -54.96 12.84 21.45 0.28 -54.68 15 14 Si 0.96 45.18 29.54 68.60 2.03 47.21 15 15 H -0.27 -12.59 7.11 99.48 0.71 -11.88 15 16 H -0.28 -12.54 7.11 99.48 0.71 -11.84 15 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 18 C -0.19 -7.14 8.95 22.36 0.20 -6.94 15 19 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 20 H 0.07 1.36 8.10 -2.39 -0.02 1.34 15 21 H 0.09 1.30 8.10 -2.39 -0.02 1.28 15 22 H 0.17 3.03 8.06 -2.91 -0.02 3.00 15 23 H 0.18 4.58 8.06 -2.91 -0.02 4.56 15 24 H 0.36 16.57 8.29 -74.06 -0.61 15.96 15 25 H 0.26 15.17 8.31 -92.71 -0.77 14.40 15 26 H 0.14 4.97 6.73 -2.91 -0.02 4.95 15 Total: -1.00 -71.14 234.21 2.31 -68.83 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.57 Total: 16.96 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 3.00 Total: -21.43 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -1.56 Total: -79.95 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.73 Total: -31.62 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -71.14 2.31 -68.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535855102.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.947 kcal (2) G-P(sol) polarization free energy of solvation -71.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds