Wall clock time and date at job start Mon Mar 30 2020 02:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00376 * 2 1 4 4 H 1.48510 * 109.47311 * 270.00200 * 3 2 1 5 5 H 1.48504 * 109.47077 * 29.99673 * 3 2 1 6 6 H 1.48498 * 109.47538 * 149.99848 * 3 2 1 7 7 C 1.37883 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99504 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.46771 * 180.02562 * 9 7 2 11 11 C 1.35900 * 116.99911 * 180.02562 * 10 9 7 12 12 C 1.38794 * 120.02754 * 359.97438 * 11 10 9 13 13 C 1.38152 * 120.05465 * 180.02562 * 12 11 10 14 14 C 1.38198 * 120.10904 * 0.02562 * 13 12 11 15 15 C 1.38747 * 120.05719 * 359.97438 * 14 13 12 16 16 O 1.35898 * 120.02922 * 180.02562 * 15 14 13 17 17 C 1.38614 * 120.02881 * 179.97438 * 11 10 9 18 18 H 0.97004 * 119.99845 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.47484 * 60.00388 * 9 7 2 20 20 H 1.09009 * 109.47493 * 299.99839 * 9 7 2 21 21 H 1.07999 * 119.97602 * 0.03268 * 12 11 10 22 22 H 1.08000 * 119.94492 * 179.97438 * 13 12 11 23 23 H 1.08002 * 119.97571 * 180.02562 * 14 13 12 24 24 H 0.96704 * 113.99386 * 270.01636 * 16 15 14 25 25 H 1.08009 * 120.05108 * 0.24105 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.6601 -4.8411 -0.0011 12 6 0.2842 -5.0235 -0.0011 13 6 -0.2445 -6.2999 -0.0011 14 6 0.5947 -7.3979 -0.0006 15 6 1.9708 -7.2208 -0.0006 16 8 2.7955 -8.3009 -0.0006 17 6 2.5039 -5.9408 -0.0016 18 1 -0.4850 0.8401 -0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6246 -2.5570 0.8897 21 1 -0.3737 -4.1671 -0.0011 22 1 -1.3154 -6.4398 -0.0006 23 1 0.1791 -8.3947 -0.0010 24 1 3.0340 -8.6136 0.8828 25 1 3.5748 -5.8008 0.0023 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005428614.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:24 Heat of formation + Delta-G solvation = -66.073339 kcal Electronic energy + Delta-G solvation = -11387.637522 eV Core-core repulsion = 9138.494171 eV Total energy + Delta-G solvation = -2249.143350 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.63379 -37.79716 -35.53922 -32.94854 -30.24950 -28.88989 -27.45287 -23.43046 -22.19945 -21.22926 -18.29548 -16.91384 -16.22328 -15.58154 -15.39335 -14.74820 -14.53296 -14.31100 -13.39970 -13.01377 -12.13458 -11.84425 -11.59529 -11.10727 -11.02432 -10.94010 -10.34987 -10.23052 -10.16001 -9.30921 -8.64962 -8.42921 -7.58965 -6.27604 -4.31456 1.57191 1.83793 3.22789 3.27969 3.32751 3.93743 4.10555 4.34479 4.73627 5.09772 5.22771 5.44174 5.63310 5.82762 5.92459 6.28300 6.62202 6.71653 6.79213 6.94360 7.02432 7.10640 7.64876 7.82428 7.91975 8.41827 8.80849 9.33915 10.83663 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.082977 B = 0.007498 C = 0.006906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.360376 B = 3733.608244 C = 4053.288195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.914 3.086 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.525 4.525 8 H 0.071 0.929 9 C 0.192 3.808 10 O -0.315 6.315 11 C 0.168 3.832 12 C -0.220 4.220 13 C -0.066 4.066 14 C -0.204 4.204 15 C 0.135 3.865 16 O -0.501 6.501 17 C -0.197 4.197 18 H 0.268 0.732 19 H 0.023 0.977 20 H 0.023 0.977 21 H 0.136 0.864 22 H 0.123 0.877 23 H 0.121 0.879 24 H 0.387 0.613 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.718 -10.798 1.666 10.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.563 4.563 8 H 0.089 0.911 9 C 0.119 3.881 10 O -0.228 6.228 11 C 0.120 3.880 12 C -0.239 4.239 13 C -0.084 4.084 14 C -0.223 4.223 15 C 0.090 3.910 16 O -0.311 6.311 17 C -0.216 4.216 18 H 0.077 0.923 19 H 0.041 0.959 20 H 0.041 0.959 21 H 0.154 0.846 22 H 0.141 0.859 23 H 0.139 0.861 24 H 0.242 0.758 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.721 -10.524 1.057 10.601 hybrid contribution 0.094 0.860 0.480 0.990 sum 0.816 -9.664 1.538 9.819 Atomic orbital electron populations 1.69945 1.06148 1.27665 1.49499 1.24935 0.95053 0.99559 0.94611 0.86234 0.79620 0.81669 0.78415 1.20256 1.20887 1.19469 1.20976 0.94304 0.88702 1.52339 0.91101 1.20693 0.88670 0.81708 0.97004 1.86130 1.39199 1.11711 1.85731 1.19039 0.91351 0.86371 0.91251 1.21529 0.94806 0.98701 1.08818 1.20768 0.99318 0.91595 0.96711 1.21104 0.92560 0.99151 1.09445 1.18052 0.88539 0.85368 0.98992 1.84791 1.67340 1.45626 1.33307 1.20597 1.00337 0.90079 1.10605 0.92289 0.95922 0.95934 0.84608 0.85864 0.86104 0.75760 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.29 55.43 0.74 -25.05 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 15 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.53 -15.01 9.43 -34.44 -0.32 -15.33 15 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 15 9 C 0.19 5.11 4.49 36.00 0.16 5.27 15 10 O -0.32 -7.74 10.12 -19.43 -0.20 -7.93 15 11 C 0.17 3.51 6.68 -39.24 -0.26 3.25 15 12 C -0.22 -4.19 9.04 -39.41 -0.36 -4.54 15 13 C -0.07 -1.03 10.04 -39.63 -0.40 -1.43 15 14 C -0.20 -3.04 9.98 -39.41 -0.39 -3.44 15 15 C 0.13 2.14 6.70 -39.24 -0.26 1.88 15 16 O -0.50 -6.71 13.50 -19.42 -0.26 -6.97 15 17 C -0.20 -3.59 9.93 -39.29 -0.39 -3.98 15 18 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 19 H 0.02 0.63 7.66 -51.93 -0.40 0.23 15 20 H 0.02 0.62 7.66 -51.92 -0.40 0.22 15 21 H 0.14 2.69 6.29 -52.49 -0.33 2.36 15 22 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 23 H 0.12 1.50 8.06 -52.49 -0.42 1.07 15 24 H 0.39 3.12 9.06 45.56 0.41 3.54 15 25 H 0.13 2.26 8.06 -52.48 -0.42 1.83 15 LS Contribution 230.49 15.07 3.47 3.47 Total: -1.00 -30.74 230.49 -5.12 -35.86 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -1.53 Total: 1.16 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -2.32 Total: -16.73 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.74 Total: -25.05 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.46 Total: -14.90 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.74 -5.12 -35.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005428614.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.215 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds