Wall clock time and date at job start Mon Mar 30 2020 02:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00376 * 2 1 4 4 H 1.48510 * 109.47311 * 270.00200 * 3 2 1 5 5 H 1.48504 * 109.47077 * 29.99673 * 3 2 1 6 6 H 1.48498 * 109.47538 * 149.99848 * 3 2 1 7 7 C 1.37883 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99504 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.46771 * 180.02562 * 9 7 2 11 11 C 1.35900 * 116.99911 * 180.02562 * 10 9 7 12 12 C 1.38794 * 120.02754 * 359.97438 * 11 10 9 13 13 C 1.38152 * 120.05465 * 180.02562 * 12 11 10 14 14 C 1.38198 * 120.10904 * 0.02562 * 13 12 11 15 15 C 1.38747 * 120.05719 * 359.97438 * 14 13 12 16 16 O 1.35898 * 120.02922 * 180.02562 * 15 14 13 17 17 C 1.38614 * 120.02881 * 179.97438 * 11 10 9 18 18 H 0.97004 * 119.99845 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.47484 * 60.00388 * 9 7 2 20 20 H 1.09009 * 109.47493 * 299.99839 * 9 7 2 21 21 H 1.07999 * 119.97602 * 0.03268 * 12 11 10 22 22 H 1.08000 * 119.94492 * 179.97438 * 13 12 11 23 23 H 1.08002 * 119.97571 * 180.02562 * 14 13 12 24 24 H 0.96704 * 113.99386 * 270.01636 * 16 15 14 25 25 H 1.08009 * 120.05108 * 0.24105 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.6601 -4.8411 -0.0011 12 6 0.2842 -5.0235 -0.0011 13 6 -0.2445 -6.2999 -0.0011 14 6 0.5947 -7.3979 -0.0006 15 6 1.9708 -7.2208 -0.0006 16 8 2.7955 -8.3009 -0.0006 17 6 2.5039 -5.9408 -0.0016 18 1 -0.4850 0.8401 -0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6246 -2.5570 0.8897 21 1 -0.3737 -4.1671 -0.0011 22 1 -1.3154 -6.4398 -0.0006 23 1 0.1791 -8.3947 -0.0010 24 1 3.0340 -8.6136 0.8828 25 1 3.5748 -5.8008 0.0023 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005428614.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:24 Heat of formation + Delta-G solvation = -88.111720 kcal Electronic energy + Delta-G solvation = -11388.593177 eV Core-core repulsion = 9138.494171 eV Total energy + Delta-G solvation = -2250.099006 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.08693 -39.26694 -36.91327 -35.06445 -31.73555 -30.30651 -29.43033 -25.36660 -23.59351 -22.73964 -19.70862 -18.85032 -17.72987 -17.19029 -16.86700 -16.52572 -16.32972 -15.70256 -14.85916 -14.54480 -13.93670 -13.47415 -13.08225 -12.93109 -12.79371 -12.58332 -12.07138 -11.90282 -11.66324 -11.32055 -10.73439 -9.78737 -9.12445 -8.41098 -6.55594 0.23878 0.45286 1.38952 1.41652 1.53694 2.24389 2.58550 2.71180 2.93785 3.41385 3.91429 4.17735 4.23972 4.40813 4.57889 4.73575 4.94522 4.97727 5.32634 5.41918 5.44323 5.51861 5.74379 5.81858 6.46935 6.74915 6.86371 7.16474 8.71177 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.082977 B = 0.007498 C = 0.006906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.360376 B = 3733.608244 C = 4053.288195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.988 3.012 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.560 4.560 8 H 0.066 0.934 9 C 0.211 3.789 10 O -0.339 6.339 11 C 0.126 3.874 12 C -0.238 4.238 13 C -0.057 4.057 14 C -0.187 4.187 15 C 0.148 3.852 16 O -0.501 6.501 17 C -0.207 4.207 18 H 0.275 0.725 19 H 0.003 0.997 20 H 0.005 0.995 21 H 0.116 0.884 22 H 0.158 0.842 23 H 0.160 0.840 24 H 0.414 0.586 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.804 -12.055 1.783 12.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.810 3.190 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.598 4.598 8 H 0.084 0.916 9 C 0.138 3.862 10 O -0.253 6.253 11 C 0.079 3.921 12 C -0.257 4.257 13 C -0.075 4.075 14 C -0.205 4.205 15 C 0.103 3.897 16 O -0.314 6.314 17 C -0.226 4.226 18 H 0.084 0.916 19 H 0.021 0.979 20 H 0.023 0.977 21 H 0.134 0.866 22 H 0.176 0.824 23 H 0.178 0.822 24 H 0.274 0.726 25 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.811 -11.827 1.193 11.915 hybrid contribution 0.048 1.008 0.455 1.106 sum 0.859 -10.819 1.648 10.978 Atomic orbital electron populations 1.70046 1.07724 1.29113 1.49384 1.25952 0.96029 1.03321 0.93354 0.85106 0.78338 0.76557 0.78960 1.19186 1.19610 1.18809 1.21320 0.94370 0.90206 1.53857 0.91616 1.20228 0.88415 0.82467 0.95129 1.86042 1.38988 1.12914 1.87312 1.19414 0.92804 0.85425 0.94423 1.21523 0.93884 0.99914 1.10366 1.21130 1.01329 0.90132 0.94908 1.21531 0.91877 1.00547 1.06558 1.18079 0.89382 0.84976 0.97276 1.84734 1.66865 1.44163 1.35665 1.20758 1.00286 0.90540 1.11002 0.91642 0.97907 0.97716 0.86640 0.82421 0.82207 0.72608 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.34 13.29 21.45 0.28 -54.05 15 2 C 0.01 0.74 5.46 84.66 0.46 1.21 15 3 Si 0.99 43.57 29.54 68.60 2.03 45.59 15 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 15 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 15 7 C -0.56 -33.21 9.43 25.60 0.24 -32.97 15 8 H 0.07 3.85 7.81 -2.91 -0.02 3.83 15 9 C 0.21 11.92 4.49 71.23 0.32 12.24 15 10 O -0.34 -17.59 10.12 -92.43 -0.94 -18.53 15 11 C 0.13 5.44 6.68 22.49 0.15 5.59 15 12 C -0.24 -9.27 9.04 22.38 0.20 -9.07 15 13 C -0.06 -1.67 10.04 22.24 0.22 -1.45 15 14 C -0.19 -4.86 9.98 22.38 0.22 -4.64 15 15 C 0.15 4.29 6.70 22.49 0.15 4.44 15 16 O -0.50 -11.54 13.50 -92.40 -1.25 -12.78 15 17 C -0.21 -7.48 9.93 22.46 0.22 -7.25 15 18 H 0.27 14.88 8.31 -92.71 -0.77 14.11 15 19 H 0.00 0.18 7.66 -2.39 -0.02 0.17 15 20 H 0.01 0.29 7.66 -2.38 -0.02 0.28 15 21 H 0.12 4.89 6.29 -2.91 -0.02 4.87 15 22 H 0.16 3.48 8.06 -2.91 -0.02 3.46 15 23 H 0.16 3.01 8.06 -2.91 -0.02 2.98 15 24 H 0.41 4.97 9.06 -74.05 -0.67 4.30 15 25 H 0.13 4.59 8.06 -2.91 -0.02 4.56 15 Total: -1.00 -67.80 230.49 2.86 -64.94 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.53 Total: 6.73 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 2.20 Total: -31.90 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.28 Total: -54.05 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -2.18 Total: -31.31 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.80 2.86 -64.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005428614.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.169 kcal (2) G-P(sol) polarization free energy of solvation -67.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds