Wall clock time and date at job start Mon Mar 30 2020 02:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86797 * 120.00169 * 2 1 4 4 H 1.48496 * 109.47524 * 270.00403 * 3 2 1 5 5 H 1.48503 * 109.46813 * 30.00284 * 3 2 1 6 6 H 1.48496 * 109.47394 * 150.00110 * 3 2 1 7 7 C 1.38655 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99615 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00332 * 179.97438 * 7 2 1 10 10 C 1.35746 * 117.00240 * 185.05591 * 9 7 2 11 11 C 1.38888 * 120.06969 * 354.46688 * 10 9 7 12 12 C 1.38097 * 119.93011 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.06932 * 0.02569 * 12 11 10 14 14 C 1.50706 * 119.92770 * 179.97438 * 13 12 11 15 15 O 1.42896 * 109.46899 * 90.00153 * 14 13 12 16 16 C 1.38294 * 120.14045 * 0.24714 * 13 12 11 17 17 C 1.38099 * 120.07055 * 359.45654 * 16 13 12 18 18 H 0.96994 * 120.00190 * 359.97438 * 1 2 3 19 19 H 1.08002 * 120.03290 * 359.97438 * 11 10 9 20 20 H 1.07997 * 119.96090 * 180.02562 * 12 11 10 21 21 H 1.08996 * 109.46931 * 329.99630 * 14 13 12 22 22 H 1.09002 * 109.46697 * 210.00055 * 14 13 12 23 23 H 0.96703 * 113.99830 * 179.97438 * 15 14 13 24 24 H 1.08001 * 119.96614 * 179.70067 * 16 13 12 25 25 H 1.08000 * 120.04137 * 180.26759 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3572 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2234 -3.5745 -0.0952 12 6 3.8533 -4.7986 -0.2038 13 6 5.2296 -4.8613 -0.3248 14 6 5.9138 -6.1990 -0.4426 15 8 6.0148 -6.5626 -1.8208 16 6 5.9797 -3.6995 -0.3324 17 6 5.3553 -2.4720 -0.2303 18 1 -0.4850 0.8400 0.0004 19 1 2.1487 -3.5261 0.0006 20 1 3.2706 -5.7078 -0.1942 21 1 5.3335 -6.9520 0.0904 22 1 6.9120 -6.1358 -0.0093 23 1 6.4463 -7.4147 -1.9722 24 1 7.0547 -3.7520 -0.4222 25 1 5.9412 -1.5648 -0.2406 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020031273.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:05 Heat of formation + Delta-G solvation = -54.131169 kcal Electronic energy + Delta-G solvation = -11469.748556 eV Core-core repulsion = 9221.123057 eV Total energy + Delta-G solvation = -2248.625499 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.23084 -37.32412 -35.77974 -32.42568 -30.34015 -30.09012 -25.93029 -24.29728 -22.09392 -20.44890 -17.90791 -17.28954 -17.24127 -15.11838 -15.04054 -14.29135 -13.82409 -13.76936 -13.52593 -12.78018 -12.47560 -12.25988 -12.09864 -11.35820 -10.83961 -10.74270 -10.60306 -10.16549 -9.89898 -9.39392 -8.88605 -8.27046 -7.38618 -6.43210 -4.09991 2.12320 2.13073 3.21442 3.25413 3.39755 4.22714 4.30398 4.81601 4.88403 5.10037 5.30264 5.35791 5.64951 5.67103 5.77979 6.12162 6.32499 6.54951 6.77646 7.00563 7.22454 7.28889 7.58876 7.76328 7.80076 8.02092 8.91800 9.53557 10.64309 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.076721 B = 0.008545 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.871118 B = 3275.930092 C = 3543.372427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.165 3.835 11 C -0.225 4.225 12 C -0.053 4.053 13 C -0.188 4.188 14 C 0.132 3.868 15 O -0.570 6.570 16 C -0.057 4.057 17 C -0.196 4.196 18 H 0.280 0.720 19 H 0.135 0.865 20 H 0.110 0.890 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.369 0.631 24 H 0.113 0.887 25 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.679 -8.087 0.140 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.112 3.888 11 C -0.244 4.244 12 C -0.071 4.071 13 C -0.189 4.189 14 C 0.055 3.945 15 O -0.375 6.375 16 C -0.075 4.075 17 C -0.215 4.215 18 H 0.090 0.910 19 H 0.152 0.848 20 H 0.128 0.872 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.215 0.785 24 H 0.131 0.869 25 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.239 -7.126 0.101 11.668 hybrid contribution 0.338 0.114 0.092 0.368 sum 9.577 -7.012 0.192 11.871 Atomic orbital electron populations 1.69643 1.05583 1.28553 1.47821 1.24476 0.95037 0.98868 0.95584 0.86169 0.80316 0.81343 0.79010 1.19828 1.20746 1.18346 1.20791 0.76856 0.96705 1.52289 0.87566 1.83569 1.22683 1.25769 1.79984 1.19160 0.91731 0.85500 0.92398 1.21275 1.01190 0.91782 1.10137 1.20667 0.93327 0.96840 0.96313 1.19106 0.93812 0.93455 1.12486 1.20821 0.97846 0.93734 0.82091 1.86665 1.83156 1.41643 1.26055 1.20501 0.98430 0.91267 0.97329 1.20200 0.91974 0.97824 1.11526 0.91000 0.84774 0.87196 0.93734 0.93770 0.78522 0.86875 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.48 13.96 55.48 0.77 -24.70 15 2 C 0.06 1.80 5.49 -17.52 -0.10 1.70 15 3 Si 0.91 21.77 28.62 -169.99 -4.86 16.91 15 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.26 -6.25 7.11 56.52 0.40 -5.84 15 7 C -0.39 -11.14 9.95 30.89 0.31 -10.83 15 8 H 0.11 3.09 5.44 -52.48 -0.29 2.80 15 9 O -0.22 -5.77 8.59 0.06 0.00 -5.77 15 10 C 0.16 3.91 6.65 -39.10 -0.26 3.65 15 11 C -0.22 -5.01 9.17 -39.39 -0.36 -5.37 15 12 C -0.05 -1.02 9.69 -39.61 -0.38 -1.40 15 13 C -0.19 -3.34 5.51 -104.58 -0.58 -3.92 15 14 C 0.13 1.82 7.17 36.01 0.26 2.07 15 15 O -0.57 -7.99 13.64 -35.23 -0.48 -8.47 15 16 C -0.06 -1.02 9.69 -39.61 -0.38 -1.41 15 17 C -0.20 -4.02 9.99 -39.39 -0.39 -4.41 15 18 H 0.28 7.48 8.31 -40.82 -0.34 7.14 15 19 H 0.13 3.10 5.64 -52.49 -0.30 2.80 15 20 H 0.11 1.82 8.06 -52.49 -0.42 1.40 15 21 H 0.04 0.54 8.08 -51.93 -0.42 0.12 15 22 H 0.04 0.52 8.08 -51.93 -0.42 0.10 15 23 H 0.37 3.02 9.12 45.56 0.42 3.44 15 24 H 0.11 1.68 8.06 -52.49 -0.42 1.26 15 25 H 0.12 2.23 8.06 -52.49 -0.42 1.81 15 LS Contribution 228.29 15.07 3.44 3.44 Total: -1.00 -31.19 228.29 -4.43 -35.62 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -1.41 Total: 2.88 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -1.89 Total: -19.91 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.77 Total: -24.70 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.48 Total: -14.24 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.86 Total: 16.91 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -31.19 -4.43 -35.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020031273.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.509 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds