Wall clock time and date at job start Mon Mar 30 2020 02:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86797 * 120.00169 * 2 1 4 4 H 1.48496 * 109.47524 * 270.00403 * 3 2 1 5 5 H 1.48503 * 109.46813 * 30.00284 * 3 2 1 6 6 H 1.48496 * 109.47394 * 150.00110 * 3 2 1 7 7 C 1.38655 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99615 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00332 * 179.97438 * 7 2 1 10 10 C 1.35746 * 117.00240 * 185.05591 * 9 7 2 11 11 C 1.38888 * 120.06969 * 354.46688 * 10 9 7 12 12 C 1.38097 * 119.93011 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.06932 * 0.02569 * 12 11 10 14 14 C 1.50706 * 119.92770 * 179.97438 * 13 12 11 15 15 O 1.42896 * 109.46899 * 90.00153 * 14 13 12 16 16 C 1.38294 * 120.14045 * 0.24714 * 13 12 11 17 17 C 1.38099 * 120.07055 * 359.45654 * 16 13 12 18 18 H 0.96994 * 120.00190 * 359.97438 * 1 2 3 19 19 H 1.08002 * 120.03290 * 359.97438 * 11 10 9 20 20 H 1.07997 * 119.96090 * 180.02562 * 12 11 10 21 21 H 1.08996 * 109.46931 * 329.99630 * 14 13 12 22 22 H 1.09002 * 109.46697 * 210.00055 * 14 13 12 23 23 H 0.96703 * 113.99830 * 179.97438 * 15 14 13 24 24 H 1.08001 * 119.96614 * 179.70067 * 16 13 12 25 25 H 1.08000 * 120.04137 * 180.26759 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3572 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2234 -3.5745 -0.0952 12 6 3.8533 -4.7986 -0.2038 13 6 5.2296 -4.8613 -0.3248 14 6 5.9138 -6.1990 -0.4426 15 8 6.0148 -6.5626 -1.8208 16 6 5.9797 -3.6995 -0.3324 17 6 5.3553 -2.4720 -0.2303 18 1 -0.4850 0.8400 0.0004 19 1 2.1487 -3.5261 0.0006 20 1 3.2706 -5.7078 -0.1942 21 1 5.3335 -6.9520 0.0904 22 1 6.9120 -6.1358 -0.0093 23 1 6.4463 -7.4147 -1.9722 24 1 7.0547 -3.7520 -0.4222 25 1 5.9412 -1.5648 -0.2406 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020031273.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:05 Heat of formation + Delta-G solvation = -77.313951 kcal Electronic energy + Delta-G solvation = -11470.753837 eV Core-core repulsion = 9221.123057 eV Total energy + Delta-G solvation = -2249.630780 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.93936 -38.84065 -37.06291 -34.49141 -31.92309 -31.62870 -27.73269 -25.85036 -23.73420 -22.03113 -19.85048 -19.14299 -18.24979 -16.76624 -16.56016 -15.92388 -15.69255 -15.37700 -14.99054 -14.41082 -14.14411 -13.94218 -13.64829 -13.08085 -12.57519 -12.50064 -12.08250 -11.85441 -11.35325 -10.92685 -10.85022 -9.85368 -9.11139 -8.52216 -6.25701 0.52639 0.53416 1.30764 1.35140 1.51519 2.27018 2.69385 2.97481 3.11905 3.76565 3.99819 4.09664 4.27754 4.44183 4.55365 4.63455 4.78854 4.93532 5.20975 5.33630 5.52740 5.70192 5.77117 5.87290 6.19366 6.81569 7.04701 7.54261 8.59368 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.076721 B = 0.008545 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.871118 B = 3275.930092 C = 3543.372427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.404 4.404 8 H 0.080 0.920 9 O -0.242 6.242 10 C 0.123 3.877 11 C -0.243 4.243 12 C -0.059 4.059 13 C -0.173 4.173 14 C 0.133 3.867 15 O -0.593 6.593 16 C -0.052 4.052 17 C -0.196 4.196 18 H 0.286 0.714 19 H 0.110 0.890 20 H 0.135 0.865 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.397 0.603 24 H 0.156 0.844 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.590 -9.343 -0.041 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.480 4.480 8 H 0.098 0.902 9 O -0.150 6.150 10 C 0.074 3.926 11 C -0.262 4.262 12 C -0.077 4.077 13 C -0.174 4.174 14 C 0.056 3.944 15 O -0.402 6.402 16 C -0.070 4.070 17 C -0.215 4.215 18 H 0.095 0.905 19 H 0.128 0.872 20 H 0.153 0.847 21 H 0.083 0.917 22 H 0.094 0.906 23 H 0.247 0.753 24 H 0.174 0.826 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.185 -8.444 -0.087 14.824 hybrid contribution -0.368 0.149 0.108 0.412 sum 11.816 -8.295 0.020 14.437 Atomic orbital electron populations 1.69726 1.06939 1.29718 1.49868 1.25308 0.95907 1.02237 0.95328 0.85191 0.78809 0.77218 0.79331 1.19058 1.19012 1.18622 1.20730 0.78081 0.96210 1.52966 0.90211 1.83513 1.21296 1.27335 1.82811 1.19727 0.93299 0.85106 0.94456 1.21308 1.00329 0.93212 1.11362 1.20993 0.94679 0.96326 0.95720 1.19778 0.93266 0.96004 1.08329 1.20864 0.99384 0.91530 0.82633 1.86564 1.83915 1.43924 1.25814 1.21025 1.00600 0.90064 0.95338 1.20563 0.90576 0.99887 1.10470 0.90466 0.87196 0.84724 0.91666 0.90647 0.75321 0.82607 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.66 13.96 21.61 0.30 -55.36 15 2 C 0.01 0.63 5.49 84.83 0.47 1.10 15 3 Si 0.97 45.85 28.62 68.60 1.96 47.81 15 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 6 H -0.26 -12.30 7.11 99.48 0.71 -11.59 15 7 C -0.40 -24.29 9.95 67.92 0.68 -23.61 15 8 H 0.08 5.04 5.44 -2.91 -0.02 5.02 15 9 O -0.24 -13.47 8.59 -22.68 -0.19 -13.66 15 10 C 0.12 5.98 6.65 22.58 0.15 6.13 15 11 C -0.24 -11.15 9.17 22.39 0.21 -10.94 15 12 C -0.06 -2.17 9.69 22.25 0.22 -1.96 15 13 C -0.17 -5.52 5.51 -19.83 -0.11 -5.63 15 14 C 0.13 2.93 7.17 71.24 0.51 3.44 15 15 O -0.59 -13.69 13.64 -148.98 -2.03 -15.72 15 16 C -0.05 -1.68 9.69 22.25 0.22 -1.47 15 17 C -0.20 -7.73 9.99 22.39 0.22 -7.50 15 18 H 0.29 15.75 8.31 -92.71 -0.77 14.98 15 19 H 0.11 5.50 5.64 -2.91 -0.02 5.48 15 20 H 0.13 4.19 8.06 -2.91 -0.02 4.17 15 21 H 0.07 1.21 8.08 -2.39 -0.02 1.19 15 22 H 0.08 1.26 8.08 -2.39 -0.02 1.24 15 23 H 0.40 4.48 9.12 -74.06 -0.68 3.81 15 24 H 0.16 3.71 8.06 -2.91 -0.02 3.69 15 25 H 0.13 4.76 8.06 -2.91 -0.02 4.73 15 Total: -1.00 -70.05 228.29 3.12 -66.93 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.53 Total: 10.45 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 2.55 Total: -40.45 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.30 Total: -55.36 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -2.23 Total: -29.38 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.96 Total: 47.81 kcal Total: -70.05 3.12 -66.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020031273.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.387 kcal (2) G-P(sol) polarization free energy of solvation -70.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds