Wall clock time and date at job start Mon Mar 30 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 O 1.42897 * 109.46945 * 269.97769 * 15 14 13 17 17 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 18 18 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 19 19 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 20 20 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 21 21 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 22 22 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 23 23 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 24 24 H 0.96701 * 113.99749 * 179.97438 * 16 15 14 25 25 H 1.08006 * 120.03219 * 180.02562 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 8 1.2771 -7.7749 -0.8343 17 6 1.4365 -4.7345 0.2253 18 1 -0.4849 0.8401 -0.0004 19 1 3.9527 -2.4857 -0.0140 20 1 5.2811 -4.5471 0.1902 21 1 4.1533 -6.7247 0.4045 22 1 2.1300 -7.9004 1.0433 23 1 0.5456 -7.0924 0.9734 24 1 0.8379 -8.6363 -0.8258 25 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020031855.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:55 Heat of formation + Delta-G solvation = -80.034215 kcal Electronic energy + Delta-G solvation = -11489.395434 eV Core-core repulsion = 9239.646695 eV Total energy + Delta-G solvation = -2249.748739 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.82659 -38.72227 -37.12973 -34.31526 -32.40556 -30.77890 -27.56386 -26.55739 -23.27802 -22.39657 -19.55177 -18.80948 -18.32608 -16.81280 -16.54211 -16.15611 -15.59302 -15.44581 -14.96668 -14.36902 -14.13155 -13.54770 -13.39127 -12.97241 -12.52317 -12.30555 -12.18091 -12.06565 -11.22111 -10.93619 -10.82081 -9.77762 -9.04755 -8.48184 -6.17361 0.43618 0.69667 1.34751 1.44423 1.52900 2.17308 2.75654 3.10250 3.37599 3.77345 4.07513 4.13267 4.28857 4.42925 4.57718 4.57904 4.70475 5.03112 5.10767 5.25664 5.61311 5.68442 5.72478 6.00509 6.17860 6.96030 6.98518 7.76220 8.75304 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.066784 B = 0.008699 C = 0.007849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.159606 B = 3218.006954 C = 3566.572684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.022 2.978 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.417 4.417 8 H 0.103 0.897 9 O -0.233 6.233 10 C 0.108 3.892 11 C -0.240 4.240 12 C -0.074 4.074 13 C -0.175 4.175 14 C -0.059 4.059 15 C 0.125 3.875 16 O -0.588 6.588 17 C -0.190 4.190 18 H 0.273 0.727 19 H 0.122 0.878 20 H 0.151 0.849 21 H 0.150 0.850 22 H 0.087 0.913 23 H 0.060 0.940 24 H 0.399 0.601 25 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.608 -10.552 1.876 12.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.841 3.159 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.493 4.493 8 H 0.120 0.880 9 O -0.140 6.140 10 C 0.058 3.942 11 C -0.259 4.259 12 C -0.092 4.092 13 C -0.194 4.194 14 C -0.060 4.060 15 C 0.048 3.952 16 O -0.398 6.398 17 C -0.209 4.209 18 H 0.082 0.918 19 H 0.140 0.860 20 H 0.169 0.831 21 H 0.168 0.832 22 H 0.105 0.895 23 H 0.078 0.922 24 H 0.250 0.750 25 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.480 -9.841 1.684 11.902 hybrid contribution -0.369 0.522 0.098 0.647 sum 6.112 -9.318 1.782 11.285 Atomic orbital electron populations 1.70195 1.08107 1.28859 1.48849 1.26644 0.96885 1.02817 0.95745 0.84549 0.77807 0.74319 0.79275 1.18801 1.19496 1.17521 1.21860 0.92597 0.81404 1.53398 0.88011 1.83942 1.35940 1.12563 1.81580 1.19904 0.91801 0.87899 0.94612 1.21379 0.92993 1.00492 1.11072 1.21206 1.00504 0.91252 0.96221 1.21068 0.93348 0.98322 1.06629 1.19683 0.94238 0.93617 0.98427 1.20984 0.99033 0.90386 0.84828 1.86544 1.83360 1.40923 1.28951 1.20305 0.99520 0.90474 1.10627 0.91788 0.85987 0.83139 0.83186 0.89489 0.92205 0.75019 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.61 13.67 21.61 0.30 -57.31 15 2 C -0.02 -1.37 5.49 84.83 0.47 -0.90 15 3 Si 1.02 43.38 29.55 68.60 2.03 45.40 15 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 15 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 6 H -0.25 -9.87 7.11 99.48 0.71 -9.17 15 7 C -0.42 -24.87 9.49 67.92 0.64 -24.22 15 8 H 0.10 5.55 5.21 -2.91 -0.02 5.54 15 9 O -0.23 -14.57 9.76 -22.74 -0.22 -14.80 15 10 C 0.11 5.65 6.65 22.58 0.15 5.80 15 11 C -0.24 -10.85 9.17 22.39 0.21 -10.64 15 12 C -0.07 -2.62 10.04 22.25 0.22 -2.40 15 13 C -0.18 -5.75 9.70 22.30 0.22 -5.53 15 14 C -0.06 -2.16 5.51 -19.88 -0.11 -2.27 15 15 C 0.12 3.27 7.17 71.24 0.51 3.78 15 16 O -0.59 -15.59 13.64 -148.98 -2.03 -17.62 15 17 C -0.19 -8.69 9.65 22.39 0.22 -8.48 15 18 H 0.27 15.57 8.31 -92.71 -0.77 14.79 15 19 H 0.12 5.52 5.64 -2.91 -0.02 5.50 15 20 H 0.15 4.07 8.06 -2.91 -0.02 4.05 15 21 H 0.15 3.69 8.06 -2.91 -0.02 3.66 15 22 H 0.09 1.66 8.08 -2.39 -0.02 1.64 15 23 H 0.06 1.46 8.08 -2.39 -0.02 1.44 15 24 H 0.40 5.63 9.12 -74.06 -0.68 4.95 15 25 H 0.11 4.95 8.06 -2.91 -0.02 4.93 15 Total: -1.00 -75.18 229.42 3.13 -72.06 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.53 Total: 17.13 kcal Atomic # 6 Polarization: -47.38 SS G_CDS: 2.52 Total: -44.86 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.30 Total: -57.31 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -2.25 Total: -32.42 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -75.18 3.13 -72.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020031855.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.977 kcal (2) G-P(sol) polarization free energy of solvation -75.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds