Wall clock time and date at job start Mon Mar 30 2020 02:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86800 * 120.00195 * 2 1 4 4 H 1.48500 * 109.46859 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47183 * 300.00108 * 3 2 1 6 6 H 1.48496 * 109.46795 * 60.00237 * 3 2 1 7 7 C 1.40457 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.41031 * 120.00169 * 359.97438 * 7 2 1 10 10 O 1.21430 * 119.99999 * 0.02562 * 9 7 2 11 11 C 1.50700 * 119.99714 * 180.02562 * 9 7 2 12 12 C 1.53008 * 109.46700 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.46697 * 180.02562 * 12 11 9 14 14 C 1.34511 * 125.79278 * 90.00315 * 13 12 11 15 15 C 1.41386 * 106.84141 * 180.02562 * 14 13 12 16 16 C 1.34507 * 106.84010 * 0.02562 * 15 14 13 17 17 O 1.34304 * 108.42311 * 359.97438 * 16 15 14 18 18 H 0.97004 * 119.99657 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.46890 * 60.00783 * 11 9 7 20 20 H 1.08995 * 109.47695 * 300.00349 * 11 9 7 21 21 H 1.08994 * 109.46939 * 60.00298 * 12 11 9 22 22 H 1.09003 * 109.47242 * 299.99884 * 12 11 9 23 23 H 1.07999 * 126.58024 * 359.97438 * 14 13 12 24 24 H 1.08004 * 126.57483 * 179.97438 * 15 14 13 25 25 H 1.08004 * 125.79019 * 180.26381 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6992 1.3462 0.0006 5 1 1.8805 2.3964 -1.2125 6 1 1.8805 2.3963 1.2125 7 6 2.0074 -1.2164 -0.0005 8 1 3.0875 -1.2165 -0.0001 9 6 1.3022 -2.4378 -0.0005 10 8 0.0879 -2.4377 -0.0005 11 6 2.0557 -3.7429 -0.0005 12 6 1.0614 -4.9058 -0.0012 13 6 1.8149 -6.2109 -0.0006 14 6 2.2074 -6.8921 1.0909 15 6 2.8769 -8.0499 0.6322 16 6 2.8539 -8.0066 -0.7119 17 8 2.2092 -6.8906 -1.0897 18 1 -0.4850 0.8401 -0.0004 19 1 2.6823 -3.8006 0.8895 20 1 2.6824 -3.8007 -0.8904 21 1 0.4351 -4.8478 -0.8914 22 1 0.4343 -4.8482 0.8886 23 1 2.0434 -6.6086 2.1200 24 1 3.3221 -8.8207 1.2440 25 1 3.2776 -8.7463 -1.3751 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020385249.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:08 Heat of formation + Delta-G solvation = -41.939854 kcal Electronic energy + Delta-G solvation = -11403.912023 eV Core-core repulsion = 9155.815180 eV Total energy + Delta-G solvation = -2248.096844 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.21520 -36.96416 -33.31910 -32.62516 -32.12084 -28.53405 -26.73209 -23.48867 -21.42507 -20.12753 -19.07351 -17.01847 -16.20576 -15.65832 -15.12231 -14.36965 -13.91211 -13.21112 -12.91834 -12.52336 -12.39478 -12.04138 -11.46318 -11.25436 -11.01556 -10.88722 -10.27347 -10.16293 -10.01291 -9.63145 -8.91707 -8.13601 -7.35774 -6.22108 -4.88408 2.07174 2.92001 3.04724 3.15131 3.20071 3.36458 4.04759 4.25212 5.06361 5.29715 5.36868 5.46127 5.92592 6.02208 6.09544 6.22604 6.25149 6.54623 6.76627 6.79441 6.91267 6.96737 7.27721 7.51336 8.11440 8.84502 8.90989 10.35642 10.58782 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.085745 B = 0.007224 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.471825 B = 3874.926889 C = 4008.267316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.083 3.917 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.363 3.637 10 O -0.547 6.547 11 C -0.153 4.153 12 C -0.028 4.028 13 C 0.016 3.984 14 C -0.231 4.231 15 C -0.212 4.212 16 C -0.063 4.063 17 O -0.178 6.178 18 H 0.272 0.728 19 H 0.067 0.933 20 H 0.065 0.935 21 H 0.080 0.920 22 H 0.094 0.906 23 H 0.145 0.855 24 H 0.142 0.858 25 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.410 -9.041 0.301 10.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.258 3.742 10 O -0.436 6.436 11 C -0.192 4.192 12 C -0.065 4.065 13 C -0.035 4.035 14 C -0.250 4.250 15 C -0.232 4.232 16 C -0.130 4.130 17 O -0.074 6.074 18 H 0.083 0.917 19 H 0.085 0.915 20 H 0.084 0.916 21 H 0.099 0.901 22 H 0.112 0.888 23 H 0.163 0.837 24 H 0.160 0.840 25 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.603 -8.908 0.006 10.027 hybrid contribution 0.846 0.528 0.231 1.024 sum 5.450 -8.380 0.237 9.998 Atomic orbital electron populations 1.69968 1.07501 1.27784 1.31705 1.26020 0.94580 1.00936 0.92488 0.86359 0.80873 0.81456 0.78450 1.18465 1.19910 1.19916 1.20842 0.94951 0.91973 1.49013 0.91260 1.19464 0.88968 0.87559 0.78233 1.90399 1.15494 1.88811 1.48903 1.22100 0.98899 0.96525 1.01640 1.20040 0.96552 0.85284 1.04652 1.23135 1.00437 0.96151 0.83737 1.21565 1.06596 0.97174 0.99629 1.21770 1.05896 1.00688 0.94807 1.23888 1.02566 0.90558 0.95985 1.84046 1.57500 1.30242 1.35578 0.91710 0.91485 0.91615 0.90120 0.88777 0.83719 0.83971 0.78682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.53 11.72 55.57 0.65 -20.88 15 2 C 0.08 2.26 5.50 -17.27 -0.10 2.16 15 3 Si 0.90 19.57 29.56 -169.99 -5.03 14.54 15 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 7 C -0.54 -14.99 9.22 -37.69 -0.35 -15.34 15 8 H 0.07 1.80 7.85 -52.48 -0.41 1.39 15 9 C 0.36 10.14 6.90 -33.25 -0.23 9.91 15 10 O -0.55 -17.07 14.50 5.43 0.08 -17.00 15 11 C -0.15 -3.42 5.55 -27.88 -0.15 -3.58 15 12 C -0.03 -0.57 5.04 -27.88 -0.14 -0.71 15 13 C 0.02 0.29 6.57 -35.63 -0.23 0.05 15 14 C -0.23 -3.76 10.81 -39.70 -0.43 -4.19 15 15 C -0.21 -2.98 10.91 -39.70 -0.43 -3.41 15 16 C -0.06 -0.86 12.09 29.41 0.36 -0.51 15 17 O -0.18 -3.09 10.65 5.70 0.06 -3.03 15 18 H 0.27 7.07 8.29 -40.82 -0.34 6.73 15 19 H 0.07 1.40 8.14 -51.93 -0.42 0.98 15 20 H 0.07 1.41 8.14 -51.93 -0.42 0.99 15 21 H 0.08 1.70 8.10 -51.93 -0.42 1.28 15 22 H 0.09 1.91 8.10 -51.93 -0.42 1.49 15 23 H 0.14 2.15 8.06 -52.49 -0.42 1.72 15 24 H 0.14 1.57 8.06 -52.48 -0.42 1.15 15 25 H 0.20 1.81 8.06 -52.48 -0.42 1.39 15 LS Contribution 233.16 15.07 3.51 3.51 Total: -1.00 -32.27 233.16 -4.93 -37.20 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -2.50 Total: 1.27 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.71 Total: -15.61 kcal Atomic # 7 Polarization: -21.53 SS G_CDS: 0.65 Total: -20.88 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.14 Total: -20.03 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -32.27 -4.93 -37.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020385249.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.742 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds