Wall clock time and date at job start Mon Mar 30 2020 02:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99538 * 2 1 4 4 H 1.48503 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47516 * 299.99907 * 3 2 1 6 6 H 1.48501 * 109.47605 * 60.00199 * 3 2 1 7 7 C 1.37871 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47065 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.47065 * 180.02562 * 10 9 7 12 12 O 1.21446 * 119.99881 * 359.97438 * 11 10 9 13 13 C 1.41311 * 119.99979 * 180.02562 * 11 10 9 14 14 C 1.38072 * 126.11717 * 180.02562 * 13 11 10 15 15 C 1.40122 * 106.51686 * 180.20599 * 14 13 11 16 16 C 1.35283 * 107.22708 * 359.62653 * 15 14 13 17 17 O 1.33828 * 109.06013 * 0.37836 * 16 15 14 18 18 H 0.96992 * 120.00072 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.47029 * 59.99824 * 9 7 2 20 20 H 1.08999 * 109.46825 * 300.00049 * 9 7 2 21 21 H 1.08999 * 109.47061 * 60.00526 * 10 9 7 22 22 H 1.08999 * 109.47472 * 299.99817 * 10 9 7 23 23 H 1.08002 * 126.73709 * 359.93297 * 14 13 11 24 24 H 1.07996 * 126.38258 * 179.77597 * 15 14 13 25 25 H 1.08005 * 125.46620 * 180.11701 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4920 -4.9672 -0.0025 12 8 0.2775 -4.9672 -0.0015 13 6 2.1986 -6.1909 -0.0031 14 6 1.6397 -7.4534 -0.0042 15 6 2.7068 -8.3615 0.0003 16 6 3.8494 -7.6371 -0.0045 17 8 3.5411 -6.3348 -0.0034 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6249 -2.5571 0.8897 21 1 2.8727 -3.6046 0.8877 22 1 2.8714 -3.6039 -0.8923 23 1 0.5867 -7.6938 -0.0038 24 1 2.6312 -9.4388 0.0042 25 1 4.8496 -8.0445 -0.0046 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034156357.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:13 Heat of formation + Delta-G solvation = -54.854473 kcal Electronic energy + Delta-G solvation = -11365.615029 eV Core-core repulsion = 9116.958166 eV Total energy + Delta-G solvation = -2248.656864 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.62517 -40.34111 -35.64672 -34.10353 -33.15293 -31.24538 -27.94906 -25.07222 -22.89861 -22.40926 -20.65553 -19.03726 -18.13356 -17.42648 -16.65958 -16.45781 -15.95955 -15.76644 -14.43542 -14.14739 -14.08204 -13.98162 -13.53562 -13.24787 -12.86120 -12.47204 -11.97900 -11.73328 -11.33862 -11.04595 -10.79009 -10.59267 -9.67358 -8.20020 -6.34014 -0.29781 1.36707 1.41212 1.42749 1.56367 1.88972 1.92846 2.41030 3.12724 3.24484 3.92064 3.98360 4.28083 4.49142 4.54805 4.58963 4.87939 4.91023 5.13455 5.41139 5.46192 5.58173 5.81079 5.88566 6.15242 6.51327 6.84342 7.36005 8.92879 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.081118 B = 0.007293 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.094694 B = 3838.507014 C = 4163.154475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.975 3.025 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.035 3.965 10 C -0.145 4.145 11 C 0.428 3.572 12 O -0.486 6.486 13 C -0.144 4.144 14 C -0.115 4.115 15 C -0.237 4.237 16 C 0.024 3.976 17 O -0.162 6.162 18 H 0.264 0.736 19 H -0.013 1.013 20 H -0.013 1.013 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.159 0.841 24 H 0.191 0.809 25 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.317 -15.716 -0.005 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.799 3.201 4 H -0.179 1.179 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.090 0.910 9 C -0.003 4.003 10 C -0.182 4.182 11 C 0.311 3.689 12 O -0.366 6.366 13 C -0.193 4.193 14 C -0.135 4.135 15 C -0.255 4.255 16 C -0.046 4.046 17 O -0.057 6.057 18 H 0.073 0.927 19 H 0.005 0.995 20 H 0.005 0.995 21 H 0.121 0.879 22 H 0.121 0.879 23 H 0.177 0.823 24 H 0.208 0.792 25 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 9.744 -15.341 -0.004 18.174 hybrid contribution -0.329 0.786 -0.001 0.852 sum 9.416 -14.555 -0.005 17.335 Atomic orbital electron populations 1.70169 1.08220 1.27843 1.51426 1.26138 0.95792 1.03927 0.94521 0.85250 0.79181 0.77973 0.77701 1.17857 1.20423 1.20411 1.21721 0.93909 0.91709 1.50904 0.90965 1.18787 0.93815 0.92683 0.94980 1.21989 0.99752 0.91974 1.04521 1.20373 0.88264 0.89660 0.70640 1.90590 1.16580 1.89821 1.39640 1.21625 0.81970 0.97121 1.18633 1.22850 1.02197 0.91087 0.97404 1.22258 0.90789 1.02572 1.09892 1.25675 1.02856 0.78692 0.97409 1.84122 1.22430 1.29444 1.69678 0.92740 0.99477 0.99468 0.87910 0.87918 0.82296 0.79160 0.72220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.95 13.29 21.45 0.28 -59.67 15 2 C -0.01 -0.38 5.46 84.65 0.46 0.09 15 3 Si 0.98 45.10 29.54 68.60 2.03 47.12 15 4 H -0.26 -10.97 7.11 99.48 0.71 -10.27 15 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 7 C -0.54 -32.02 9.11 25.60 0.23 -31.79 15 8 H 0.07 3.93 7.74 -2.91 -0.02 3.91 15 9 C 0.03 1.98 4.26 29.85 0.13 2.11 15 10 C -0.15 -6.38 5.37 29.85 0.16 -6.22 15 11 C 0.43 17.86 6.94 26.44 0.18 18.04 15 12 O -0.49 -23.79 16.42 -3.54 -0.06 -23.84 15 13 C -0.14 -4.72 6.89 22.99 0.16 -4.56 15 14 C -0.12 -3.09 10.61 22.69 0.24 -2.85 15 15 C -0.24 -4.16 10.86 22.05 0.24 -3.92 15 16 C 0.02 0.38 12.06 67.14 0.81 1.19 15 17 O -0.16 -4.30 10.47 -5.19 -0.05 -4.35 15 18 H 0.26 15.71 8.31 -92.71 -0.77 14.94 15 19 H -0.01 -0.84 8.10 -2.38 -0.02 -0.86 15 20 H -0.01 -0.83 8.10 -2.39 -0.02 -0.85 15 21 H 0.10 4.15 8.14 -2.39 -0.02 4.13 15 22 H 0.10 4.14 8.14 -2.39 -0.02 4.12 15 23 H 0.16 4.12 8.06 -2.91 -0.02 4.10 15 24 H 0.19 1.90 8.06 -2.91 -0.02 1.88 15 25 H 0.26 1.11 8.06 -2.91 -0.02 1.08 15 Total: -1.00 -76.17 235.29 5.99 -70.18 By element: Atomic # 1 Polarization: -2.70 SS G_CDS: 1.18 Total: -1.52 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 2.61 Total: -27.92 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.28 Total: -59.67 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.11 Total: -28.20 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.17 5.99 -70.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034156357.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.325 kcal (2) G-P(sol) polarization free energy of solvation -76.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds