Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38614 * 120.06034 * 2 1 4 4 O 1.35906 * 120.02243 * 359.70312 * 3 2 1 5 5 C 1.38784 * 119.96052 * 179.72938 * 3 2 1 6 6 C 1.38235 * 120.08091 * 359.97438 * 5 3 2 7 7 C 1.38109 * 120.12181 * 359.97438 * 6 5 3 8 8 C 1.38754 * 120.06467 * 179.72522 * 2 1 3 9 9 O 1.35749 * 120.03963 * 0.27458 * 8 2 1 10 10 C 1.34831 * 117.00178 * 174.39734 * 9 8 2 11 11 H 1.08003 * 120.00099 * 5.06859 * 10 9 8 12 12 C 1.38657 * 120.00031 * 185.06358 * 10 9 8 13 13 N 1.31557 * 119.99826 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99981 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46731 * 90.00138 * 14 12 10 16 16 H 1.48497 * 109.47145 * 209.99827 * 14 12 10 17 17 H 1.48501 * 109.47394 * 330.00353 * 14 12 10 18 18 H 1.09002 * 109.47262 * 90.00216 * 1 2 3 19 19 H 1.09002 * 109.47013 * 210.00089 * 1 2 3 20 20 H 1.09004 * 109.47207 * 329.99923 * 1 2 3 21 21 H 0.96696 * 114.00039 * 89.99906 * 4 3 2 22 22 H 1.08001 * 119.96251 * 180.02562 * 5 3 2 23 23 H 1.07992 * 119.93837 * 180.02562 * 6 5 3 24 24 H 1.07999 * 119.98207 * 179.97438 * 7 6 5 25 25 H 0.96997 * 120.00250 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2013 1.1997 0.0000 4 8 1.5235 2.3777 -0.0061 5 6 3.5891 1.1973 0.0057 6 6 4.2799 -0.0001 0.0119 7 6 3.5915 -1.1974 0.0130 8 6 2.2021 -1.2008 0.0058 9 8 1.5255 -2.3777 0.0058 10 6 2.2574 -3.5046 -0.1058 11 1 3.3360 -3.4500 -0.1075 12 6 1.6252 -4.7335 -0.2182 13 7 2.3394 -5.8331 -0.3266 14 14 -0.2404 -4.8280 -0.2144 15 1 -0.7442 -4.7207 -1.6073 16 1 -0.6691 -6.1248 0.3684 17 1 -0.7909 -3.7138 0.5983 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3634 0.8900 0.5139 21 1 1.3234 2.7208 0.8755 22 1 4.1302 2.1320 0.0061 23 1 5.3598 0.0007 0.0167 24 1 4.1335 -2.1315 0.0174 25 1 1.8972 -6.6929 -0.4049 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036896635.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = -72.323491 kcal Electronic energy + Delta-G solvation = -11816.784910 eV Core-core repulsion = 9567.370533 eV Total energy + Delta-G solvation = -2249.414377 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.18925 -39.31782 -36.81812 -34.51483 -33.28919 -30.11992 -27.91098 -27.02798 -23.14876 -22.49993 -20.18307 -19.20279 -17.95565 -16.98833 -16.57938 -16.04189 -15.81568 -15.46553 -14.61082 -14.33201 -14.11082 -13.88673 -13.29713 -12.91217 -12.86278 -12.58153 -12.31312 -12.06302 -11.62913 -11.22173 -10.91913 -9.46944 -9.09020 -8.51430 -6.24102 0.37798 0.58376 1.30603 1.34538 1.50734 2.26712 2.66863 2.90229 3.01720 3.59145 4.02754 4.14903 4.27705 4.57220 4.75448 4.79265 4.84800 4.91641 5.34449 5.39752 5.52744 5.64224 5.72592 5.82299 6.10969 6.82635 6.93857 7.55584 8.59979 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.051575 B = 0.011842 C = 0.009695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.765788 B = 2363.994461 C = 2887.515751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.195 4.195 3 C 0.146 3.854 4 O -0.496 6.496 5 C -0.206 4.206 6 C -0.063 4.063 7 C -0.246 4.246 8 C 0.133 3.867 9 O -0.235 6.235 10 C -0.401 4.401 11 H 0.083 0.917 12 C 0.013 3.987 13 N -0.921 5.921 14 Si 0.966 3.034 15 H -0.267 1.267 16 H -0.267 1.267 17 H -0.260 1.260 18 H 0.060 0.940 19 H 0.046 0.954 20 H 0.088 0.912 21 H 0.409 0.591 22 H 0.152 0.848 23 H 0.149 0.851 24 H 0.114 0.886 25 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 12.749 2.298 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.197 4.197 3 C 0.101 3.899 4 O -0.309 6.309 5 C -0.224 4.224 6 C -0.081 4.081 7 C -0.265 4.265 8 C 0.084 3.916 9 O -0.142 6.142 10 C -0.478 4.478 11 H 0.101 0.899 12 C -0.186 4.186 13 N -0.562 5.562 14 Si 0.789 3.211 15 H -0.192 1.192 16 H -0.191 1.191 17 H -0.184 1.184 18 H 0.079 0.921 19 H 0.066 0.934 20 H 0.107 0.893 21 H 0.268 0.732 22 H 0.170 0.830 23 H 0.166 0.834 24 H 0.131 0.869 25 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.133 12.425 1.703 12.721 hybrid contribution -0.199 -0.721 0.403 0.850 sum -2.332 11.704 2.106 12.118 Atomic orbital electron populations 1.20363 0.89895 1.02324 1.01922 1.19622 0.97616 0.90191 1.12237 1.17873 0.89863 0.83858 0.98283 1.84725 1.76550 1.34394 1.35209 1.21354 0.92970 0.99068 1.09053 1.21007 1.00598 0.90607 0.95842 1.21385 0.93732 0.99882 1.11533 1.19231 0.91323 0.86037 0.95021 1.83501 1.36047 1.12024 1.82663 1.20748 0.92072 0.82870 1.52076 0.89944 1.25248 1.04828 0.93149 0.95393 1.69722 1.38273 0.98714 1.49465 0.85280 0.78104 0.78310 0.79447 1.19184 1.19147 1.18403 0.92118 0.93447 0.89298 0.73232 0.82992 0.83350 0.86860 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.08 9.57 71.23 0.68 -2.40 15 2 C -0.19 -7.71 5.91 -19.65 -0.12 -7.82 15 3 C 0.15 4.79 6.67 22.49 0.15 4.94 15 4 O -0.50 -12.72 12.55 -92.49 -1.16 -13.88 15 5 C -0.21 -6.29 9.99 22.40 0.22 -6.07 15 6 C -0.06 -2.13 10.03 22.24 0.22 -1.91 15 7 C -0.25 -10.81 9.17 22.41 0.21 -10.60 15 8 C 0.13 6.31 6.62 22.56 0.15 6.46 15 9 O -0.24 -12.73 7.63 -22.74 -0.17 -12.90 15 10 C -0.40 -23.61 9.95 67.92 0.68 -22.93 15 11 H 0.08 5.06 5.43 -2.91 -0.02 5.05 15 12 C 0.01 0.72 5.49 84.83 0.47 1.19 15 13 N -0.92 -54.88 13.96 21.61 0.30 -54.58 15 14 Si 0.97 45.24 28.62 68.60 1.96 47.20 15 15 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 17 H -0.26 -12.05 7.11 99.48 0.71 -11.34 15 18 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 19 H 0.05 1.80 7.53 -2.39 -0.02 1.79 15 20 H 0.09 2.42 7.54 -2.38 -0.02 2.40 15 21 H 0.41 6.08 9.06 -74.06 -0.67 5.40 15 22 H 0.15 3.57 8.06 -2.91 -0.02 3.54 15 23 H 0.15 4.01 8.06 -2.91 -0.02 3.98 15 24 H 0.11 5.41 5.63 -2.91 -0.02 5.39 15 25 H 0.29 15.57 8.31 -92.71 -0.77 14.80 15 Total: -1.00 -66.70 225.24 4.13 -62.56 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.54 Total: 10.74 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 2.66 Total: -39.14 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.30 Total: -54.58 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -1.33 Total: -26.78 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.96 Total: 47.20 kcal Total: -66.70 4.13 -62.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036896635.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.759 kcal (2) G-P(sol) polarization free energy of solvation -66.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds