Wall clock time and date at job start Mon Mar 30 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76191 * 102.99961 * 2 1 4 4 C 1.39396 * 119.96082 * 0.02562 * 3 2 1 5 5 C 1.38456 * 120.42160 * 180.02562 * 4 3 2 6 6 C 1.37703 * 120.32888 * 359.97438 * 5 4 3 7 7 C 1.40766 * 119.90825 * 359.97372 * 6 5 4 8 8 C 1.41405 * 120.20786 * 180.02562 * 7 6 5 9 9 H 1.08007 * 119.99827 * 24.39424 * 8 7 6 10 10 C 1.39932 * 120.00275 * 204.38899 * 8 7 6 11 11 N 1.30824 * 119.99508 * 17.85390 * 10 8 7 12 12 Si 1.86800 * 119.99985 * 197.85615 * 10 8 7 13 13 H 1.48499 * 109.47160 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.46997 * 120.00154 * 12 10 8 15 15 H 1.48506 * 109.46646 * 239.99756 * 12 10 8 16 16 C 1.38349 * 119.95842 * 180.02562 * 3 2 1 17 17 H 1.08998 * 109.47087 * 300.00141 * 1 2 3 18 18 H 1.09002 * 109.46917 * 60.00058 * 1 2 3 19 19 H 1.08996 * 109.47367 * 179.97438 * 1 2 3 20 20 H 1.08000 * 119.78748 * 359.97438 * 4 3 2 21 21 H 1.07997 * 119.83722 * 180.02562 * 5 4 3 22 22 H 1.08004 * 120.04912 * 179.97438 * 6 5 4 23 23 H 0.97005 * 120.00135 * 179.97438 * 11 10 8 24 24 H 1.07999 * 120.16085 * 359.72319 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1903 2.6667 0.0005 5 6 1.4909 4.0183 0.0000 6 6 2.8020 4.4390 -0.0005 7 6 3.8432 3.4916 0.0000 8 6 5.1919 3.9166 0.0000 9 1 5.4508 4.8915 0.3860 10 6 6.1910 3.0740 -0.4999 11 7 5.8718 2.0676 -1.2724 12 14 7.9804 3.3862 -0.0640 13 1 8.0746 4.5778 0.8171 14 1 8.5315 2.2023 0.6430 15 1 8.7576 3.6270 -1.3063 16 6 3.5337 2.1203 -0.0005 17 1 -0.3633 0.5138 0.8900 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 0.1589 2.3464 0.0005 21 1 0.6931 4.7462 0.0009 22 1 3.0314 5.4944 -0.0014 23 1 6.5644 1.4837 -1.6193 24 1 4.3251 1.3854 0.0036 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038234128.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:46 Heat of formation + Delta-G solvation = 6.408521 kcal Electronic energy + Delta-G solvation = -9696.564643 eV Core-core repulsion = 7893.317213 eV Total energy + Delta-G solvation = -1803.247430 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.37410 -33.71646 -30.19463 -29.32889 -28.43837 -25.20720 -21.18592 -20.80895 -17.57257 -15.94129 -15.10077 -14.85275 -13.63911 -13.47852 -13.25859 -13.09977 -12.47459 -11.91867 -11.70626 -11.26026 -11.10412 -10.75516 -10.52740 -10.10434 -9.66246 -9.30781 -9.16873 -8.48963 -7.48812 -6.83198 -6.41108 -4.41717 2.40122 2.66593 2.89038 3.07041 3.12175 3.17044 3.34346 3.91392 4.54554 5.47872 5.50336 5.59836 5.99864 6.14596 6.35330 6.73242 7.00780 7.06475 7.25427 7.38547 7.74308 7.84489 7.96736 8.17469 8.51503 8.83479 8.87649 10.14967 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.049546 B = 0.011537 C = 0.009621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.991461 B = 2426.480712 C = 2909.746646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.166 6.166 3 C -0.059 4.059 4 C -0.254 4.254 5 C -0.081 4.081 6 C -0.227 4.227 7 C 0.120 3.880 8 C -0.460 4.460 9 H 0.081 0.919 10 C 0.075 3.925 11 N -0.788 5.788 12 Si 0.909 3.091 13 H -0.260 1.260 14 H -0.271 1.271 15 H -0.274 1.274 16 C -0.138 4.138 17 H 0.075 0.925 18 H 0.076 0.924 19 H 0.092 0.908 20 H 0.090 0.910 21 H 0.091 0.909 22 H 0.095 0.905 23 H 0.282 0.718 24 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.714 -1.827 1.514 4.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.073 5.927 3 C -0.171 4.171 4 C -0.278 4.278 5 C -0.101 4.101 6 C -0.248 4.248 7 C 0.115 3.885 8 C -0.490 4.490 9 H 0.099 0.901 10 C -0.144 4.144 11 N -0.412 5.412 12 Si 0.733 3.267 13 H -0.183 1.183 14 H -0.196 1.196 15 H -0.199 1.199 16 C -0.163 4.163 17 H 0.094 0.906 18 H 0.095 0.905 19 H 0.111 0.889 20 H 0.109 0.891 21 H 0.109 0.891 22 H 0.113 0.887 23 H 0.093 0.907 24 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.974 -3.057 1.366 4.479 hybrid contribution -0.075 1.209 0.033 1.212 sum -3.049 -1.848 1.399 3.830 Atomic orbital electron populations 1.23442 0.96615 1.05216 1.04962 1.85089 1.04581 1.08661 1.94381 1.21207 0.97240 0.92622 1.06023 1.20327 0.95733 0.93164 1.18547 1.20409 0.95720 0.94139 0.99783 1.21029 0.92404 0.97874 1.13443 1.17510 0.92886 0.90628 0.87484 1.19619 0.91017 1.02287 1.36049 0.90092 1.25951 1.01901 0.93967 0.92544 1.69832 1.36083 1.13393 1.21939 0.86254 0.81467 0.79675 0.79321 1.18321 1.19603 1.19926 1.21006 0.92421 0.96697 1.06173 0.90589 0.90542 0.88902 0.89145 0.89084 0.88696 0.90697 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.15 101.05 0.92 -1.14 14 2 S -0.17 -3.42 22.56 -107.50 -2.42 -5.85 14 3 C -0.06 -1.44 6.10 -39.11 -0.24 -1.68 14 4 C -0.25 -5.82 9.37 -39.07 -0.37 -6.19 14 5 C -0.08 -1.84 10.01 -39.70 -0.40 -2.24 14 6 C -0.23 -5.64 9.79 -38.82 -0.38 -6.02 14 7 C 0.12 3.24 5.57 -106.85 -0.60 2.65 14 8 C -0.46 -12.27 9.05 -37.74 -0.34 -12.61 14 9 H 0.08 2.06 7.91 -52.48 -0.41 1.64 14 10 C 0.07 1.89 5.14 -17.35 -0.09 1.80 14 11 N -0.79 -20.66 10.95 55.55 0.61 -20.05 14 12 Si 0.91 18.68 29.60 -169.99 -5.03 13.65 14 13 H -0.26 -5.26 7.11 56.52 0.40 -4.86 14 14 H -0.27 -5.50 7.11 56.52 0.40 -5.09 14 15 H -0.27 -5.52 7.11 56.52 0.40 -5.12 14 16 C -0.14 -3.72 8.42 -38.66 -0.33 -4.05 14 17 H 0.08 1.13 7.74 -51.93 -0.40 0.73 14 18 H 0.08 1.16 7.74 -51.92 -0.40 0.75 14 19 H 0.09 1.17 8.14 -51.93 -0.42 0.75 14 20 H 0.09 1.82 5.85 -52.49 -0.31 1.52 14 21 H 0.09 1.78 8.06 -52.49 -0.42 1.36 14 22 H 0.09 2.19 8.06 -52.48 -0.42 1.77 14 23 H 0.28 6.71 8.30 -40.82 -0.34 6.37 14 24 H 0.13 3.51 6.16 -52.49 -0.32 3.19 14 LS Contribution 224.99 15.07 3.39 3.39 Total: -1.00 -27.82 224.99 -7.52 -35.34 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -2.25 Total: 2.99 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: -1.81 Total: -29.47 kcal Atomic # 7 Polarization: -20.66 SS G_CDS: 0.61 Total: -20.05 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -2.42 Total: -5.85 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -27.82 -7.52 -35.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038234128.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.748 kcal (2) G-P(sol) polarization free energy of solvation -27.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds