Wall clock time and date at job start Mon Mar 30 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76191 * 102.99961 * 2 1 4 4 C 1.39396 * 119.96082 * 0.02562 * 3 2 1 5 5 C 1.38456 * 120.42160 * 180.02562 * 4 3 2 6 6 C 1.37703 * 120.32888 * 359.97438 * 5 4 3 7 7 C 1.40766 * 119.90825 * 359.97372 * 6 5 4 8 8 C 1.41405 * 120.20786 * 180.02562 * 7 6 5 9 9 H 1.08007 * 119.99827 * 24.39424 * 8 7 6 10 10 C 1.39932 * 120.00275 * 204.38899 * 8 7 6 11 11 N 1.30824 * 119.99508 * 17.85390 * 10 8 7 12 12 Si 1.86800 * 119.99985 * 197.85615 * 10 8 7 13 13 H 1.48499 * 109.47160 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.46997 * 120.00154 * 12 10 8 15 15 H 1.48506 * 109.46646 * 239.99756 * 12 10 8 16 16 C 1.38349 * 119.95842 * 180.02562 * 3 2 1 17 17 H 1.08998 * 109.47087 * 300.00141 * 1 2 3 18 18 H 1.09002 * 109.46917 * 60.00058 * 1 2 3 19 19 H 1.08996 * 109.47367 * 179.97438 * 1 2 3 20 20 H 1.08000 * 119.78748 * 359.97438 * 4 3 2 21 21 H 1.07997 * 119.83722 * 180.02562 * 5 4 3 22 22 H 1.08004 * 120.04912 * 179.97438 * 6 5 4 23 23 H 0.97005 * 120.00135 * 179.97438 * 11 10 8 24 24 H 1.07999 * 120.16085 * 359.72319 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1903 2.6667 0.0005 5 6 1.4909 4.0183 0.0000 6 6 2.8020 4.4390 -0.0005 7 6 3.8432 3.4916 0.0000 8 6 5.1919 3.9166 0.0000 9 1 5.4508 4.8915 0.3860 10 6 6.1910 3.0740 -0.4999 11 7 5.8718 2.0676 -1.2724 12 14 7.9804 3.3862 -0.0640 13 1 8.0746 4.5778 0.8171 14 1 8.5315 2.2023 0.6430 15 1 8.7576 3.6270 -1.3063 16 6 3.5337 2.1203 -0.0005 17 1 -0.3633 0.5138 0.8900 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 0.1589 2.3464 0.0005 21 1 0.6931 4.7462 0.0009 22 1 3.0314 5.4944 -0.0014 23 1 6.5644 1.4837 -1.6193 24 1 4.3251 1.3854 0.0036 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038234128.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:46 Heat of formation + Delta-G solvation = -8.541579 kcal Electronic energy + Delta-G solvation = -9697.212928 eV Core-core repulsion = 7893.317213 eV Total energy + Delta-G solvation = -1803.895715 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.25037 -35.60934 -32.03657 -31.20428 -29.79120 -27.10732 -23.06618 -22.68969 -19.45454 -17.76891 -16.84419 -16.59311 -15.48787 -15.19333 -14.69566 -14.55322 -14.20532 -13.60526 -13.38566 -12.96887 -12.82216 -12.59858 -12.20094 -11.83417 -11.48624 -11.14512 -10.89363 -10.28689 -9.41732 -8.70574 -8.13316 -6.40959 0.80742 0.86842 1.01374 1.37406 1.48597 1.53605 1.75675 2.19249 2.66059 3.64176 4.32406 4.35789 4.39889 4.54783 4.84769 4.86979 5.09157 5.17837 5.33980 5.48725 5.83680 5.94509 6.03739 6.27328 6.56714 6.88283 6.94442 8.29705 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.049546 B = 0.011537 C = 0.009621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.991461 B = 2426.480712 C = 2909.746646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.192 6.192 3 C -0.069 4.069 4 C -0.252 4.252 5 C -0.079 4.079 6 C -0.244 4.244 7 C 0.088 3.912 8 C -0.497 4.497 9 H 0.081 0.919 10 C 0.033 3.967 11 N -0.823 5.823 12 Si 0.985 3.015 13 H -0.255 1.255 14 H -0.266 1.266 15 H -0.264 1.264 16 C -0.172 4.172 17 H 0.087 0.913 18 H 0.084 0.916 19 H 0.127 0.873 20 H 0.125 0.875 21 H 0.130 0.870 22 H 0.104 0.896 23 H 0.289 0.711 24 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 -1.906 1.742 5.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S 0.047 5.953 3 C -0.181 4.181 4 C -0.276 4.276 5 C -0.099 4.099 6 C -0.265 4.265 7 C 0.084 3.916 8 C -0.527 4.527 9 H 0.099 0.901 10 C -0.182 4.182 11 N -0.449 5.449 12 Si 0.805 3.195 13 H -0.178 1.178 14 H -0.190 1.190 15 H -0.188 1.188 16 C -0.197 4.197 17 H 0.106 0.894 18 H 0.103 0.897 19 H 0.145 0.855 20 H 0.143 0.857 21 H 0.148 0.852 22 H 0.122 0.878 23 H 0.099 0.901 24 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.206 -3.136 1.592 5.483 hybrid contribution 0.102 1.176 -0.047 1.181 sum -4.104 -1.960 1.545 4.804 Atomic orbital electron populations 1.23593 0.91535 1.07853 1.05889 1.85127 1.10075 1.06013 1.94065 1.21527 0.96797 0.95283 1.04527 1.20787 0.97010 0.92999 1.16803 1.20851 0.95877 0.95201 0.97956 1.21281 0.93143 0.98123 1.13973 1.17907 0.93983 0.91466 0.88277 1.19897 0.91954 1.03081 1.37729 0.90076 1.26845 1.06336 0.93334 0.91717 1.69899 1.37801 1.14374 1.22784 0.85125 0.75455 0.79643 0.79293 1.17814 1.19030 1.18841 1.20915 0.93288 0.96398 1.09092 0.89411 0.89707 0.85457 0.85732 0.85199 0.87753 0.90064 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 9.15 113.37 1.04 -2.21 14 2 S -0.19 -7.68 22.56 -56.49 -1.27 -8.96 14 3 C -0.07 -3.37 6.10 22.58 0.14 -3.23 14 4 C -0.25 -11.01 9.37 22.60 0.21 -10.80 14 5 C -0.08 -3.47 10.01 22.20 0.22 -3.24 14 6 C -0.24 -12.17 9.79 22.76 0.22 -11.95 14 7 C 0.09 4.91 5.57 -21.31 -0.12 4.79 14 8 C -0.50 -27.42 9.05 23.46 0.21 -27.21 14 9 H 0.08 4.27 7.91 -2.91 -0.02 4.24 14 10 C 0.03 1.70 5.14 85.25 0.44 2.14 14 11 N -0.82 -44.66 10.95 21.82 0.24 -44.43 14 12 Si 0.98 38.91 29.60 68.60 2.03 40.94 14 13 H -0.25 -9.75 7.11 99.48 0.71 -9.04 14 14 H -0.27 -10.16 7.11 99.48 0.71 -9.46 14 15 H -0.26 -9.90 7.11 99.48 0.71 -9.20 14 16 C -0.17 -9.57 8.42 22.87 0.19 -9.38 14 17 H 0.09 2.22 7.74 -2.39 -0.02 2.20 14 18 H 0.08 2.20 7.74 -2.39 -0.02 2.18 14 19 H 0.13 2.61 8.14 -2.39 -0.02 2.59 14 20 H 0.12 4.51 5.85 -2.91 -0.02 4.49 14 21 H 0.13 4.60 8.06 -2.91 -0.02 4.58 14 22 H 0.10 4.83 8.06 -2.91 -0.02 4.80 14 23 H 0.29 14.14 8.30 -92.70 -0.77 13.37 14 24 H 0.10 6.01 6.16 -2.91 -0.02 5.99 14 Total: -1.00 -61.52 224.99 4.74 -56.78 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 1.19 Total: 16.75 kcal Atomic # 6 Polarization: -63.64 SS G_CDS: 2.56 Total: -61.09 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.24 Total: -44.43 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Atomic # 16 Polarization: -7.68 SS G_CDS: -1.27 Total: -8.96 kcal Total: -61.52 4.74 -56.78 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038234128.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.238 kcal (2) G-P(sol) polarization free energy of solvation -61.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds