Wall clock time and date at job start Mon Mar 30 2020 02:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 119.99908 * 2 1 4 4 N 1.46900 * 109.46803 * 125.00721 * 3 2 1 5 5 C 1.46821 * 110.99825 * 293.95147 * 4 3 2 6 6 C 1.50216 * 110.20849 * 175.10183 * 5 4 3 7 7 C 1.34081 * 122.69948 * 342.74351 * 6 5 4 8 8 C 1.40075 * 118.82728 * 180.46943 * 7 6 5 9 9 H 1.07999 * 119.99828 * 17.15592 * 8 7 6 10 10 C 1.40310 * 120.00015 * 196.87780 * 8 7 6 11 11 N 1.30685 * 119.99968 * 15.67112 * 10 8 7 12 12 Si 1.86800 * 119.99990 * 195.66692 * 10 8 7 13 13 H 1.48498 * 109.47107 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47147 * 119.99908 * 12 10 8 15 15 H 1.48498 * 109.46815 * 240.00273 * 12 10 8 16 16 C 1.50372 * 122.34521 * 0.74887 * 7 6 5 17 17 C 1.47179 * 111.00416 * 57.08835 * 4 3 2 18 18 H 1.08003 * 120.00170 * 359.97438 * 1 2 3 19 19 H 1.07997 * 120.00045 * 179.97438 * 1 2 3 20 20 H 1.08003 * 120.00170 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47390 * 5.00373 * 3 2 1 22 22 H 1.09005 * 109.47315 * 245.00517 * 3 2 1 23 23 H 1.08999 * 109.34620 * 54.87458 * 5 4 3 24 24 H 1.08995 * 109.22874 * 295.24908 * 5 4 3 25 25 H 1.08002 * 118.65376 * 162.71992 * 6 5 4 26 26 H 0.96993 * 120.00380 * 180.02562 * 11 10 8 27 27 H 1.08998 * 109.43693 * 103.09615 * 16 7 6 28 28 H 1.09002 * 109.43790 * 222.96655 * 16 7 6 29 29 H 1.08998 * 109.60720 * 286.21390 * 17 4 3 30 30 H 1.09000 * 109.60932 * 46.55765 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3318 1.1344 5 6 2.2717 1.3469 2.4113 6 6 3.2381 1.2537 3.5575 7 6 4.5040 0.8385 3.4058 8 6 5.3331 0.7734 4.5329 9 1 4.9006 0.7810 5.5225 10 6 6.7251 0.6925 4.3761 11 7 7.2708 0.9821 3.2246 12 14 7.7981 0.1708 5.8135 13 1 6.9428 -0.1005 6.9967 14 1 8.5463 -1.0598 5.4516 15 1 8.7579 1.2574 6.1345 16 6 5.0671 0.4462 2.0678 17 6 3.9213 0.1881 1.0839 18 1 -0.5400 0.9353 0.0004 19 1 -0.5400 -0.9353 -0.0004 20 1 1.8500 -0.9353 -0.0004 21 1 1.3585 2.1317 0.0896 22 1 2.6212 1.4027 -0.9315 23 1 1.5860 0.5003 2.4473 24 1 1.7049 2.2744 2.4914 25 1 2.8995 1.5329 4.5443 26 1 8.2330 0.9258 3.1160 27 1 5.6994 1.2499 1.6906 28 1 5.6611 -0.4613 2.1762 29 1 3.3921 -0.7228 1.3637 30 1 4.3200 0.0844 0.0747 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039081674.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:44 Heat of formation + Delta-G solvation = 13.918075 kcal Electronic energy + Delta-G solvation = -12038.598766 eV Core-core repulsion = 10026.475861 eV Total energy + Delta-G solvation = -2012.122906 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.84531 -36.77042 -34.58338 -32.47878 -31.17778 -28.70259 -25.85476 -24.03061 -23.14537 -20.67990 -19.47277 -17.79781 -17.14422 -16.46765 -15.94271 -15.49707 -15.30079 -14.35849 -14.12693 -13.95108 -13.65346 -13.09468 -12.97402 -12.68938 -12.29946 -12.21605 -12.17595 -11.99652 -11.38403 -11.02424 -10.88916 -10.31603 -9.44244 -9.06148 -8.49211 -6.28156 1.24963 1.37135 1.37868 1.52016 1.98001 2.24417 3.26133 3.30220 4.01692 4.21821 4.28943 4.45285 4.58457 4.71351 4.83276 4.87582 4.95085 5.06285 5.10519 5.27684 5.30702 5.34306 5.68804 5.71223 5.79717 5.94984 6.25627 6.32089 6.51837 6.67676 7.11775 7.34564 8.38463 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.080469 B = 0.008897 C = 0.008505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.875938 B = 3146.309647 C = 3291.558390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.201 4.201 3 C 0.077 3.923 4 N -0.538 5.538 5 C 0.146 3.854 6 C -0.430 4.430 7 C 0.067 3.933 8 C -0.516 4.516 9 H 0.055 0.945 10 C 0.038 3.962 11 N -0.828 5.828 12 Si 0.977 3.023 13 H -0.268 1.268 14 H -0.260 1.260 15 H -0.265 1.265 16 C -0.040 4.040 17 C 0.062 3.938 18 H 0.107 0.893 19 H 0.107 0.893 20 H 0.099 0.901 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.009 0.991 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.287 0.713 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.021 0.979 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 -2.453 -5.643 7.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.221 4.221 3 C -0.050 4.050 4 N -0.262 5.262 5 C 0.019 3.981 6 C -0.452 4.452 7 C 0.065 3.935 8 C -0.546 4.546 9 H 0.073 0.927 10 C -0.177 4.177 11 N -0.455 5.455 12 Si 0.799 3.201 13 H -0.192 1.192 14 H -0.184 1.184 15 H -0.190 1.190 16 C -0.078 4.078 17 C -0.066 4.066 18 H 0.125 0.875 19 H 0.125 0.875 20 H 0.117 0.883 21 H 0.101 0.899 22 H 0.107 0.893 23 H 0.027 0.973 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.335 -1.970 -5.807 7.510 hybrid contribution 0.035 -0.893 0.978 1.325 sum -4.301 -2.862 -4.828 7.071 Atomic orbital electron populations 1.23993 0.95340 1.02715 0.99371 1.23693 0.97382 0.99667 1.01328 1.21519 0.94454 0.94781 0.94288 1.62522 1.18425 1.42486 1.02719 1.20135 0.93400 0.97364 0.87191 1.21685 0.98248 1.29001 0.96236 1.18500 0.92474 0.88857 0.93713 1.19709 0.92233 1.48424 0.94212 0.92712 1.26758 0.99610 0.91684 0.99610 1.69845 1.13535 1.35665 1.26443 0.85242 0.77639 0.79036 0.78233 1.19166 1.18428 1.18967 1.20214 0.94978 0.99911 0.92665 1.22208 0.93950 0.91010 0.99399 0.87511 0.87524 0.88252 0.89879 0.89253 0.97336 0.92911 0.92547 0.90231 0.91375 0.93904 0.96036 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.23 14.32 67.78 0.97 -3.26 16 2 C -0.20 -5.75 7.65 25.65 0.20 -5.55 16 3 C 0.08 2.40 5.78 85.56 0.49 2.90 16 4 N -0.54 -22.23 4.90 -905.32 -4.44 -26.67 16 5 C 0.15 6.56 5.49 85.42 0.47 7.02 16 6 C -0.43 -23.28 9.70 24.59 0.24 -23.05 16 7 C 0.07 3.77 5.60 -20.47 -0.11 3.66 16 8 C -0.52 -29.83 8.90 23.22 0.21 -29.63 16 9 H 0.05 3.21 7.88 -2.91 -0.02 3.18 16 10 C 0.04 1.98 5.18 85.37 0.44 2.43 16 11 N -0.83 -43.55 10.38 21.89 0.23 -43.32 16 12 Si 0.98 39.98 29.59 68.60 2.03 42.01 16 13 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 14 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 15 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 16 C -0.04 -2.04 4.31 29.82 0.13 -1.91 16 17 C 0.06 2.63 4.80 86.32 0.41 3.05 16 18 H 0.11 2.29 7.84 -2.91 -0.02 2.27 16 19 H 0.11 2.21 8.06 -2.91 -0.02 2.19 16 20 H 0.10 2.95 7.05 -2.91 -0.02 2.93 16 21 H 0.08 2.39 7.77 -2.39 -0.02 2.37 16 22 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 23 H 0.01 0.38 7.12 -2.39 -0.02 0.37 16 24 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.06 3.16 7.98 -2.91 -0.02 3.14 16 26 H 0.29 13.55 8.29 -92.71 -0.77 12.78 16 27 H 0.07 3.72 7.02 -2.39 -0.02 3.71 16 28 H 0.04 2.23 7.57 -2.39 -0.02 2.21 16 29 H 0.02 0.90 7.04 -2.39 -0.02 0.89 16 30 H 0.08 2.91 8.04 -2.39 -0.02 2.89 16 Total: -1.00 -60.26 245.88 2.36 -57.90 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 1.09 Total: 14.42 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 3.45 Total: -44.35 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: -4.21 Total: -69.99 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -60.26 2.36 -57.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039081674.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.821 kcal (2) G-P(sol) polarization free energy of solvation -60.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds