Wall clock time and date at job start Mon Mar 30 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46792 * 140.37723 * 3 2 1 5 5 N 1.46905 * 109.47195 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00191 * 190.00146 * 5 4 3 7 7 C 1.50700 * 109.47298 * 159.74425 * 6 5 4 8 8 H 1.08002 * 119.99650 * 354.08934 * 7 6 5 9 9 C 1.37873 * 119.99942 * 174.08299 * 7 6 5 10 10 N 1.31520 * 119.99768 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00419 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47206 * 89.99692 * 11 9 7 13 13 H 1.48497 * 109.47433 * 210.00208 * 11 9 7 14 14 H 1.48505 * 109.46808 * 329.99962 * 11 9 7 15 15 C 1.46900 * 110.99573 * 66.04281 * 5 4 3 16 16 C 1.53001 * 117.50008 * 262.86739 * 15 5 4 17 17 C 1.53005 * 117.49332 * 194.21113 * 15 5 4 18 18 H 4.44645 * 5.63486 * 180.02562 * 4 1 2 19 19 H 1.08996 * 109.46688 * 260.37169 * 3 2 1 20 20 H 1.08995 * 109.47474 * 20.37723 * 3 2 1 21 21 H 1.09002 * 109.47432 * 300.00034 * 4 3 2 22 22 H 1.09004 * 109.47150 * 59.99943 * 4 3 2 23 23 H 1.09002 * 109.47219 * 279.74553 * 6 5 4 24 24 H 1.08999 * 109.47239 * 39.74255 * 6 5 4 25 25 H 0.96998 * 120.00258 * 180.02562 * 10 9 7 26 26 H 1.08991 * 115.55048 * 48.54957 * 15 5 4 27 27 H 1.08996 * 117.49534 * 0.02562 * 16 15 5 28 28 H 1.09000 * 117.49417 * 145.02265 * 16 15 5 29 29 H 1.09003 * 117.49491 * 214.98058 * 17 15 5 30 30 H 1.08998 * 117.50315 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.1120 -0.9199 5 7 4.6245 1.1131 -0.9195 6 6 5.1503 2.3056 -1.5974 7 6 6.5744 2.5423 -1.1651 8 1 7.0111 1.9327 -0.3878 9 6 7.3197 3.5369 -1.7619 10 7 8.5627 3.7431 -1.3850 11 14 6.5641 4.5915 -3.1059 12 1 5.9199 5.7828 -2.4968 13 1 7.6259 5.0297 -4.0470 14 1 5.5458 3.8002 -3.8422 15 6 5.1520 -0.1148 -1.5294 16 6 5.5630 -1.2501 -0.5898 17 6 6.6336 -0.4303 -1.3142 18 1 -1.0502 -0.0001 0.0003 19 1 3.0092 0.1727 1.0132 20 1 3.0099 -0.9625 -0.3578 21 1 2.7922 0.9401 -1.9332 22 1 2.7916 2.0752 -0.5621 23 1 5.1185 2.1539 -2.6763 24 1 4.5421 3.1710 -1.3342 25 1 9.0870 4.4430 -1.8046 26 1 4.7132 -0.3892 -2.4886 27 1 5.4417 -1.0861 0.4809 28 1 5.3948 -2.2716 -0.9310 29 1 7.1693 -0.9127 -2.1318 30 1 7.2170 0.2734 -0.7205 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549234.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:02 Heat of formation + Delta-G solvation = 84.311035 kcal Electronic energy + Delta-G solvation = -11805.251990 eV Core-core repulsion = 9796.181552 eV Total energy + Delta-G solvation = -2009.070438 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.00097 -34.64996 -33.31224 -32.20230 -29.67806 -26.77073 -22.73069 -21.88394 -21.58515 -19.47288 -17.87460 -16.80953 -15.24893 -15.04686 -14.66125 -13.94789 -13.56425 -12.99763 -12.84847 -12.30992 -12.08650 -11.45400 -11.25108 -10.90134 -10.73650 -10.41845 -10.13666 -9.99154 -9.84404 -9.57087 -9.21544 -9.10680 -8.52533 -7.43353 -6.02451 -3.98407 2.94338 2.98794 3.29141 3.36766 3.38580 4.38106 4.43728 4.55133 4.84930 5.28326 5.46512 5.57139 5.63998 5.73241 5.87520 5.99507 6.09317 6.19150 6.28705 6.36548 6.39848 6.72957 6.79429 6.95911 7.15979 7.65051 7.74850 7.87236 8.07265 8.68237 9.06930 9.59328 11.10087 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.038167 B = 0.010380 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.447172 B = 2696.813319 C = 3224.680711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.168 4.168 3 C -0.013 4.013 4 C 0.064 3.936 5 N -0.502 5.502 6 C 0.162 3.838 7 C -0.500 4.500 8 H 0.087 0.913 9 C 0.067 3.933 10 N -0.901 5.901 11 Si 0.870 3.130 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.268 1.268 15 C 0.016 3.984 16 C -0.185 4.185 17 C -0.150 4.150 18 H 0.214 0.786 19 H 0.094 0.906 20 H 0.088 0.912 21 H 0.025 0.975 22 H 0.072 0.928 23 H -0.006 1.006 24 H 0.022 0.978 25 H 0.263 0.737 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 -7.321 0.056 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.168 4.168 3 C -0.050 4.050 4 C -0.065 4.065 5 N -0.226 5.226 6 C 0.037 3.963 7 C -0.538 4.538 8 H 0.105 0.895 9 C -0.134 4.134 10 N -0.541 5.541 11 Si 0.698 3.302 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.193 1.193 15 C -0.093 4.093 16 C -0.223 4.223 17 C -0.187 4.187 18 H 0.231 0.769 19 H 0.112 0.888 20 H 0.107 0.893 21 H 0.044 0.956 22 H 0.091 0.909 23 H 0.012 0.988 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.870 -7.166 0.493 12.207 hybrid contribution -0.848 0.689 -1.668 1.994 sum -10.718 -6.477 -1.175 12.578 Atomic orbital electron populations 1.24790 0.95855 1.02185 1.02383 1.23423 0.94749 0.99367 0.99270 1.18806 0.83372 1.00620 1.02160 1.21967 0.89547 0.98068 0.96882 1.61726 1.04036 1.02001 1.54828 1.20212 0.96972 0.87027 0.92124 1.21094 0.94409 1.17228 1.21082 0.89535 1.24884 0.94752 0.97043 0.96693 1.69884 1.08316 1.32927 1.42947 0.86938 0.79241 0.81267 0.82750 1.20280 1.21261 1.19343 1.22110 0.99204 0.92259 0.95712 1.23063 1.05991 0.94422 0.98819 1.23168 0.91378 1.01702 1.02453 0.76948 0.88828 0.89344 0.95632 0.90922 0.98789 0.96035 0.92748 0.91292 0.88792 0.90167 0.90144 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -2.97 19.25 29.55 0.57 -2.40 16 2 C -0.17 -2.43 13.34 -37.12 -0.50 -2.93 16 3 C -0.01 -0.19 5.51 -29.52 -0.16 -0.35 16 4 C 0.06 1.12 4.89 -3.82 -0.02 1.10 16 5 N -0.50 -10.37 4.56 -228.08 -1.04 -11.41 16 6 C 0.16 3.91 3.87 -4.98 -0.02 3.89 16 7 C -0.50 -13.83 8.42 -34.44 -0.29 -14.12 16 8 H 0.09 2.57 6.04 -52.49 -0.32 2.25 16 9 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 10 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 11 Si 0.87 21.43 27.59 -169.99 -4.69 16.74 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.27 -6.43 6.38 56.52 0.36 -6.06 16 15 C 0.02 0.31 4.20 -67.71 -0.28 0.02 16 16 C -0.19 -2.99 9.22 -26.69 -0.25 -3.23 16 17 C -0.15 -2.88 9.48 -26.69 -0.25 -3.14 16 18 H 0.21 1.85 7.80 -54.08 -0.42 1.43 16 19 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 20 H 0.09 1.26 6.56 -51.93 -0.34 0.92 16 21 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 22 H 0.07 1.27 7.82 -51.93 -0.41 0.87 16 23 H -0.01 -0.14 6.63 -51.93 -0.34 -0.48 16 24 H 0.02 0.52 7.44 -51.93 -0.39 0.13 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.12 2.80 5.52 -51.93 -0.29 2.51 16 LS Contribution 255.30 15.07 3.85 3.85 Total: -1.00 -29.62 255.30 -6.62 -36.24 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.21 Total: 0.35 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -1.30 Total: -19.32 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.27 Total: -37.85 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.69 Total: 16.74 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.62 -6.62 -36.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549234.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.551 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds