Wall clock time and date at job start Mon Mar 30 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46792 * 140.37723 * 3 2 1 5 5 N 1.46905 * 109.47195 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00191 * 190.00146 * 5 4 3 7 7 C 1.50700 * 109.47298 * 159.74425 * 6 5 4 8 8 H 1.08002 * 119.99650 * 354.08934 * 7 6 5 9 9 C 1.37873 * 119.99942 * 174.08299 * 7 6 5 10 10 N 1.31520 * 119.99768 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00419 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47206 * 89.99692 * 11 9 7 13 13 H 1.48497 * 109.47433 * 210.00208 * 11 9 7 14 14 H 1.48505 * 109.46808 * 329.99962 * 11 9 7 15 15 C 1.46900 * 110.99573 * 66.04281 * 5 4 3 16 16 C 1.53001 * 117.50008 * 262.86739 * 15 5 4 17 17 C 1.53005 * 117.49332 * 194.21113 * 15 5 4 18 18 H 4.44645 * 5.63486 * 180.02562 * 4 1 2 19 19 H 1.08996 * 109.46688 * 260.37169 * 3 2 1 20 20 H 1.08995 * 109.47474 * 20.37723 * 3 2 1 21 21 H 1.09002 * 109.47432 * 300.00034 * 4 3 2 22 22 H 1.09004 * 109.47150 * 59.99943 * 4 3 2 23 23 H 1.09002 * 109.47219 * 279.74553 * 6 5 4 24 24 H 1.08999 * 109.47239 * 39.74255 * 6 5 4 25 25 H 0.96998 * 120.00258 * 180.02562 * 10 9 7 26 26 H 1.08991 * 115.55048 * 48.54957 * 15 5 4 27 27 H 1.08996 * 117.49534 * 0.02562 * 16 15 5 28 28 H 1.09000 * 117.49417 * 145.02265 * 16 15 5 29 29 H 1.09003 * 117.49491 * 214.98058 * 17 15 5 30 30 H 1.08998 * 117.50315 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.1120 -0.9199 5 7 4.6245 1.1131 -0.9195 6 6 5.1503 2.3056 -1.5974 7 6 6.5744 2.5423 -1.1651 8 1 7.0111 1.9327 -0.3878 9 6 7.3197 3.5369 -1.7619 10 7 8.5627 3.7431 -1.3850 11 14 6.5641 4.5915 -3.1059 12 1 5.9199 5.7828 -2.4968 13 1 7.6259 5.0297 -4.0470 14 1 5.5458 3.8002 -3.8422 15 6 5.1520 -0.1148 -1.5294 16 6 5.5630 -1.2501 -0.5898 17 6 6.6336 -0.4303 -1.3142 18 1 -1.0502 -0.0001 0.0003 19 1 3.0092 0.1727 1.0132 20 1 3.0099 -0.9625 -0.3578 21 1 2.7922 0.9401 -1.9332 22 1 2.7916 2.0752 -0.5621 23 1 5.1185 2.1539 -2.6763 24 1 4.5421 3.1710 -1.3342 25 1 9.0870 4.4430 -1.8046 26 1 4.7132 -0.3892 -2.4886 27 1 5.4417 -1.0861 0.4809 28 1 5.3948 -2.2716 -0.9310 29 1 7.1693 -0.9127 -2.1318 30 1 7.2170 0.2734 -0.7205 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549234.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:02 Heat of formation + Delta-G solvation = 65.466631 kcal Electronic energy + Delta-G solvation = -11806.069145 eV Core-core repulsion = 9796.181552 eV Total energy + Delta-G solvation = -2009.887592 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.52829 -35.91429 -35.10186 -33.93364 -31.17593 -28.53059 -24.09495 -23.81133 -23.03336 -21.06304 -19.02884 -18.74872 -16.87090 -16.45690 -16.31164 -15.66821 -14.94799 -14.74296 -14.23526 -13.97468 -13.82896 -13.04890 -12.76382 -12.61438 -12.32924 -12.14305 -11.93105 -11.37407 -11.16477 -11.08319 -10.88316 -10.72008 -10.63716 -9.06085 -8.22013 -6.22563 1.34624 1.35858 1.45232 1.89841 1.96861 2.36670 2.97640 3.09756 3.16708 3.69864 4.15245 4.20705 4.21494 4.33697 4.55106 4.59137 4.76242 4.84135 4.92207 5.07170 5.08538 5.11460 5.22894 5.33511 5.53038 5.63037 6.01693 6.45354 6.65527 6.75244 6.84279 7.38961 8.93577 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.038167 B = 0.010380 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.447172 B = 2696.813319 C = 3224.680711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.217 4.217 3 C 0.000 4.000 4 C 0.066 3.934 5 N -0.516 5.516 6 C 0.170 3.830 7 C -0.498 4.498 8 H 0.052 0.948 9 C 0.009 3.991 10 N -0.948 5.948 11 Si 0.937 3.063 12 H -0.268 1.268 13 H -0.284 1.284 14 H -0.255 1.255 15 C 0.003 3.997 16 C -0.145 4.145 17 C -0.173 4.173 18 H 0.250 0.750 19 H 0.089 0.911 20 H 0.095 0.905 21 H 0.030 0.970 22 H 0.067 0.933 23 H -0.010 1.010 24 H 0.023 0.977 25 H 0.264 0.736 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.731 -8.195 -0.670 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.218 4.218 3 C -0.037 4.037 4 C -0.062 4.062 5 N -0.240 5.240 6 C 0.044 3.956 7 C -0.537 4.537 8 H 0.070 0.930 9 C -0.188 4.188 10 N -0.589 5.589 11 Si 0.761 3.239 12 H -0.194 1.194 13 H -0.210 1.210 14 H -0.179 1.179 15 C -0.106 4.106 16 C -0.182 4.182 17 C -0.211 4.211 18 H 0.266 0.734 19 H 0.107 0.893 20 H 0.114 0.886 21 H 0.048 0.952 22 H 0.085 0.915 23 H 0.008 0.992 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.136 0.864 29 H 0.111 0.889 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.418 -8.060 -0.222 14.806 hybrid contribution -0.099 0.890 -1.362 1.631 sum -12.517 -7.169 -1.585 14.512 Atomic orbital electron populations 1.25693 0.96705 0.99729 0.99931 1.23503 0.95143 1.01616 1.01516 1.18564 0.84231 0.99749 1.01162 1.21991 0.87293 0.99064 0.97829 1.61618 1.06175 1.01524 1.54712 1.19974 0.94864 0.88878 0.91913 1.21315 0.96235 1.16253 1.19859 0.92957 1.25727 0.95119 0.98628 0.99340 1.70034 1.09997 1.34084 1.44817 0.85871 0.78633 0.79591 0.79761 1.19355 1.20969 1.17919 1.22261 0.98476 0.92640 0.97232 1.23107 1.01662 0.95170 0.98310 1.23009 0.91766 1.02804 1.03492 0.73406 0.89265 0.88648 0.95214 0.91468 0.99184 0.95872 0.92691 0.90099 0.88847 0.86442 0.88927 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.42 19.25 74.32 1.43 -2.99 16 2 C -0.22 -5.77 13.34 31.13 0.42 -5.36 16 3 C 0.00 -0.01 5.51 28.79 0.16 0.15 16 4 C 0.07 2.23 4.89 86.30 0.42 2.65 16 5 N -0.52 -21.12 4.56 -875.51 -4.00 -25.11 16 6 C 0.17 8.20 3.87 85.56 0.33 8.53 16 7 C -0.50 -28.35 8.42 25.60 0.22 -28.13 16 8 H 0.05 3.28 6.04 -2.91 -0.02 3.27 16 9 C 0.01 0.50 5.47 84.65 0.46 0.96 16 10 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16 11 Si 0.94 44.35 27.59 68.60 1.89 46.24 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.26 -11.42 6.38 99.48 0.63 -10.78 16 15 C 0.00 0.10 4.20 44.92 0.19 0.29 16 16 C -0.15 -4.39 9.22 30.62 0.28 -4.11 16 17 C -0.17 -6.71 9.48 30.62 0.29 -6.42 16 18 H 0.25 3.12 7.80 -4.41 -0.03 3.09 16 19 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 20 H 0.10 2.49 6.56 -2.39 -0.02 2.48 16 21 H 0.03 0.97 8.12 -2.39 -0.02 0.95 16 22 H 0.07 2.30 7.82 -2.38 -0.02 2.28 16 23 H -0.01 -0.47 6.63 -2.39 -0.02 -0.48 16 24 H 0.02 1.10 7.44 -2.39 -0.02 1.09 16 25 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.08 3.85 5.52 -2.39 -0.01 3.84 16 Total: -1.00 -65.02 255.30 3.42 -61.60 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.03 Total: 10.41 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 4.20 Total: -34.43 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -3.70 Total: -83.82 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.89 Total: 46.24 kcal Total: -65.02 3.42 -61.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549234.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.065 kcal (2) G-P(sol) polarization free energy of solvation -65.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds