Wall clock time and date at job start Mon Mar 30 2020 02:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31512 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99802 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46841 * 89.99881 * 8 6 4 10 10 H 1.48494 * 109.47129 * 210.00104 * 8 6 4 11 11 H 1.48501 * 109.47268 * 330.00196 * 8 6 4 12 12 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 13 13 O 1.21446 * 119.99819 * 270.00151 * 12 2 1 14 14 C 1.41309 * 120.00108 * 89.99913 * 12 2 1 15 15 C 1.38068 * 126.11966 * 179.97438 * 14 12 2 16 16 C 1.40122 * 106.52143 * 180.02562 * 15 14 12 17 17 C 1.35292 * 107.22796 * 0.02562 * 16 15 14 18 18 O 1.33840 * 109.05721 * 359.73082 * 17 16 15 19 19 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 21 21 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 22 22 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 23 23 H 1.08002 * 126.74203 * 0.02783 * 15 14 12 24 24 H 1.08004 * 126.38987 * 179.97438 * 16 15 14 25 25 H 1.07990 * 125.47177 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9774 1.9955 3.9070 11 1 0.8493 2.1774 1.4922 12 6 2.0323 -0.7105 -1.2304 13 8 2.2347 -1.9076 -1.2003 14 6 2.2678 0.0162 -2.4193 15 6 2.7258 -0.5035 -3.6136 16 6 2.8105 0.5708 -4.5092 17 6 2.4113 1.6793 -3.8442 18 8 2.0810 1.3424 -2.5918 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.9035 -0.5277 4.4376 23 1 2.9707 -1.5354 -3.8176 24 1 3.1348 0.5231 -5.5383 25 1 2.3621 2.6752 -4.2589 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049804781.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:35 Heat of formation + Delta-G solvation = -41.727689 kcal Electronic energy + Delta-G solvation = -11876.087192 eV Core-core repulsion = 9627.999549 eV Total energy + Delta-G solvation = -2248.087644 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.59650 -40.28603 -35.91699 -34.04907 -33.42097 -31.05239 -27.22616 -26.06442 -23.08431 -22.52369 -20.58790 -18.97783 -18.30300 -17.34595 -17.02507 -16.53138 -15.56843 -15.33685 -14.60796 -14.35785 -14.06946 -13.93557 -13.76831 -13.41352 -12.88193 -12.63728 -12.16906 -11.54667 -11.29639 -11.01400 -10.83821 -10.54383 -9.63619 -8.32930 -6.41120 -0.22599 1.30983 1.37102 1.41294 1.48916 1.96837 1.99011 2.31049 3.00822 3.33536 3.95198 4.00901 4.32455 4.40294 4.58296 4.65025 4.74612 4.89490 4.94085 5.02737 5.33604 5.42868 5.52317 5.93151 6.21421 6.64333 6.67061 7.23203 8.84429 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.054966 B = 0.011524 C = 0.010296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.286374 B = 2429.192797 C = 2718.885766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.034 4.034 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.028 0.972 6 C 0.012 3.988 7 N -0.948 5.948 8 Si 0.956 3.044 9 H -0.260 1.260 10 H -0.293 1.293 11 H -0.236 1.236 12 C 0.441 3.559 13 O -0.485 6.485 14 C -0.142 4.142 15 C -0.118 4.118 16 C -0.233 4.233 17 C 0.019 3.981 18 O -0.164 6.164 19 H 0.048 0.952 20 H 0.050 0.950 21 H 0.073 0.927 22 H 0.270 0.730 23 H 0.159 0.841 24 H 0.193 0.807 25 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 9.555 -16.469 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.054 4.054 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.047 0.953 6 C -0.185 4.185 7 N -0.587 5.587 8 Si 0.781 3.219 9 H -0.185 1.185 10 H -0.220 1.220 11 H -0.160 1.160 12 C 0.324 3.676 13 O -0.365 6.365 14 C -0.191 4.191 15 C -0.137 4.137 16 C -0.252 4.252 17 C -0.051 4.051 18 O -0.059 6.059 19 H 0.067 0.933 20 H 0.068 0.932 21 H 0.092 0.908 22 H 0.078 0.922 23 H 0.177 0.823 24 H 0.210 0.790 25 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -2.347 9.104 -16.022 18.576 hybrid contribution -0.048 -0.101 0.614 0.624 sum -2.395 9.003 -15.407 18.005 Atomic orbital electron populations 1.21906 0.94425 1.01585 1.01206 1.19613 0.95605 0.97710 0.92433 0.91985 1.21040 1.32263 1.12642 0.90475 0.95319 1.25981 0.97200 1.00589 0.94779 1.70054 1.47273 1.42624 0.98753 0.85739 0.78952 0.79188 0.78068 1.18538 1.21998 1.15965 1.20233 0.72526 0.87544 0.87339 1.90495 1.43040 1.17494 1.85430 1.21744 1.15572 0.82946 0.98872 1.22819 0.97353 1.02068 0.91505 1.22239 1.08863 0.91069 1.03003 1.25677 0.96409 1.02678 0.80359 1.84135 1.65881 1.23406 1.32434 0.93301 0.93157 0.90795 0.92155 0.82307 0.78995 0.72250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.66 71.98 0.62 -5.14 15 2 C -0.03 -1.70 2.04 -12.28 -0.03 -1.72 15 3 H 0.06 2.94 6.93 -2.39 -0.02 2.92 15 4 C -0.53 -32.34 8.90 25.60 0.23 -32.12 15 5 H 0.03 2.02 7.38 -2.91 -0.02 2.00 15 6 C 0.01 0.71 5.45 84.66 0.46 1.17 15 7 N -0.95 -61.30 13.96 21.45 0.30 -61.00 15 8 Si 0.96 44.60 24.37 68.60 1.67 46.27 15 9 H -0.26 -11.36 6.87 99.48 0.68 -10.68 15 10 H -0.29 -13.46 7.11 99.48 0.71 -12.75 15 11 H -0.24 -9.90 6.53 99.48 0.65 -9.25 15 12 C 0.44 20.70 5.99 26.44 0.16 20.86 15 13 O -0.49 -25.83 16.39 -3.55 -0.06 -25.89 15 14 C -0.14 -5.23 6.87 22.98 0.16 -5.07 15 15 C -0.12 -3.49 10.61 22.69 0.24 -3.25 15 16 C -0.23 -4.63 10.86 22.05 0.24 -4.39 15 17 C 0.02 0.35 12.06 67.14 0.81 1.16 15 18 O -0.16 -4.99 10.29 -5.41 -0.06 -5.04 15 19 H 0.05 2.16 8.14 -2.39 -0.02 2.14 15 20 H 0.05 2.14 3.27 -2.39 -0.01 2.14 15 21 H 0.07 2.58 8.14 -2.39 -0.02 2.56 15 22 H 0.27 16.08 8.31 -92.71 -0.77 15.31 15 23 H 0.16 4.53 8.06 -2.91 -0.02 4.50 15 24 H 0.19 2.24 8.06 -2.91 -0.02 2.22 15 25 H 0.26 1.72 8.06 -2.92 -0.02 1.70 15 Total: -1.00 -77.23 223.31 5.87 -71.37 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: 1.11 Total: 2.80 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 2.89 Total: -28.51 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.30 Total: -61.00 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.11 Total: -30.93 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.67 Total: 46.27 kcal Total: -77.23 5.87 -71.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049804781.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.640 kcal (2) G-P(sol) polarization free energy of solvation -77.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds