Wall clock time and date at job start Mon Mar 30 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 O 1.21435 * 120.00136 * 94.99343 * 12 2 1 14 14 C 1.41309 * 119.99686 * 275.00397 * 12 2 1 15 15 C 1.38070 * 126.11874 * 179.71106 * 14 12 2 16 16 C 1.40114 * 106.52093 * 179.90311 * 15 14 12 17 17 C 1.35285 * 107.23121 * 0.35892 * 16 15 14 18 18 O 1.33835 * 109.05663 * 359.77023 * 17 16 15 19 19 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 21 21 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 22 22 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 23 23 H 1.08003 * 126.73798 * 0.03560 * 15 14 12 24 24 H 1.08008 * 126.38915 * 180.11024 * 16 15 14 25 25 H 1.08000 * 125.47174 * 179.81870 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 6 2.0324 -0.7104 1.2304 13 8 2.3211 -1.8887 1.1759 14 6 2.1673 -0.0055 2.4477 15 6 2.6075 -0.5292 3.6470 16 6 2.5829 0.5216 4.5735 17 6 2.1317 1.6188 3.9233 18 8 1.8832 1.2994 2.6476 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 0.7011 1.1560 -3.4844 23 1 2.9131 -1.5481 3.8336 24 1 2.8669 0.4652 5.6141 25 1 1.9948 2.5958 4.3628 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049804782.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:38 Heat of formation + Delta-G solvation = -26.942587 kcal Electronic energy + Delta-G solvation = -11818.410780 eV Core-core repulsion = 9570.964267 eV Total energy + Delta-G solvation = -2247.446513 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.29174 -38.37130 -33.82357 -32.73668 -30.80643 -29.36858 -25.15905 -24.15693 -21.61296 -21.04813 -19.10054 -16.97892 -16.16933 -15.87813 -15.27324 -14.61409 -13.65585 -13.33704 -12.96170 -12.72229 -12.42534 -12.36516 -11.52776 -11.03979 -10.72265 -10.68998 -10.24980 -10.05203 -9.79587 -8.98082 -8.67576 -8.35242 -8.32440 -6.01471 -4.07002 1.27316 2.56759 3.25678 3.36237 3.38929 3.43830 3.67035 4.44073 4.91063 5.09703 5.16328 5.31079 5.86842 5.92103 6.11248 6.47711 6.57998 6.73787 6.92837 7.02308 7.18858 7.55527 7.78369 8.01812 8.23676 8.53867 8.97485 9.57506 11.05422 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.065627 B = 0.009969 C = 0.009271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.551310 B = 2808.118926 C = 3019.554337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.006 3.994 3 H 0.055 0.945 4 C -0.509 4.509 5 H 0.068 0.932 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.430 3.570 13 O -0.448 6.448 14 C -0.080 4.080 15 C -0.143 4.143 16 C -0.233 4.233 17 C -0.018 4.018 18 O -0.143 6.143 19 H 0.032 0.968 20 H 0.014 0.986 21 H 0.095 0.905 22 H 0.262 0.738 23 H 0.155 0.845 24 H 0.151 0.849 25 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 2.306 10.681 10.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.013 4.013 3 H 0.072 0.928 4 C -0.547 4.547 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.325 6.325 14 C -0.131 4.131 15 C -0.163 4.163 16 C -0.252 4.252 17 C -0.089 4.089 18 O -0.036 6.036 19 H 0.051 0.949 20 H 0.033 0.967 21 H 0.114 0.886 22 H 0.072 0.928 23 H 0.173 0.827 24 H 0.168 0.832 25 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.016 1.991 10.255 10.496 hybrid contribution 0.380 -0.333 -0.449 0.676 sum 1.396 1.658 9.807 10.043 Atomic orbital electron populations 1.21636 0.95718 0.99868 1.01179 1.19164 0.94623 0.97259 0.90219 0.92756 1.21055 1.31501 1.12744 0.89427 0.91424 1.24945 0.94975 0.94998 0.99076 1.69870 1.36676 1.22935 1.23669 0.86525 0.79216 0.79819 0.81696 1.20105 1.21278 1.20184 1.21044 0.73265 0.87565 0.87254 1.90475 1.39317 1.16777 1.85913 1.22728 1.08841 0.82474 0.99040 1.22469 1.01296 1.00769 0.91776 1.21757 1.08857 0.93245 1.01321 1.24426 1.01694 1.00629 0.82104 1.84191 1.64938 1.26247 1.28240 0.94924 0.96731 0.88612 0.92822 0.82705 0.83161 0.77854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.95 37.16 0.33 -2.78 15 2 C 0.01 0.16 2.40 -92.92 -0.22 -0.06 15 3 H 0.05 1.47 8.01 -51.93 -0.42 1.06 15 4 C -0.51 -14.64 8.34 -34.44 -0.29 -14.92 15 5 H 0.07 1.99 7.03 -52.49 -0.37 1.62 15 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -25.52 11.31 55.43 0.63 -24.89 15 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.81 15 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 12 C 0.43 10.24 6.04 -33.14 -0.20 10.04 15 13 O -0.45 -11.45 16.25 5.42 0.09 -11.36 15 14 C -0.08 -1.61 6.88 -38.48 -0.26 -1.87 15 15 C -0.14 -2.41 10.61 -38.94 -0.41 -2.82 15 16 C -0.23 -3.11 10.86 -39.93 -0.43 -3.55 15 17 C -0.02 -0.23 12.06 29.68 0.36 0.12 15 18 O -0.14 -2.60 10.37 4.91 0.05 -2.55 15 19 H 0.03 0.79 8.14 -51.93 -0.42 0.36 15 20 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 15 21 H 0.10 2.54 6.06 -51.93 -0.31 2.22 15 22 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 23 H 0.16 2.41 8.06 -52.48 -0.42 1.99 15 24 H 0.15 1.49 8.06 -52.48 -0.42 1.06 15 25 H 0.20 1.69 8.06 -52.49 -0.42 1.27 15 LS Contribution 230.10 15.07 3.47 3.47 Total: -1.00 -31.04 230.10 -4.36 -35.40 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -2.35 Total: -2.66 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -1.23 Total: -14.22 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.63 Total: -24.89 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.14 Total: -13.91 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -31.04 -4.36 -35.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049804782.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.455 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds