Wall clock time and date at job start Mon Mar 30 2020 02:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 O 1.21435 * 120.00136 * 94.99343 * 12 2 1 14 14 C 1.41309 * 119.99686 * 275.00397 * 12 2 1 15 15 C 1.38070 * 126.11874 * 179.71106 * 14 12 2 16 16 C 1.40114 * 106.52093 * 179.90311 * 15 14 12 17 17 C 1.35285 * 107.23121 * 0.35892 * 16 15 14 18 18 O 1.33835 * 109.05663 * 359.77023 * 17 16 15 19 19 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 21 21 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 22 22 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 23 23 H 1.08003 * 126.73798 * 0.03560 * 15 14 12 24 24 H 1.08008 * 126.38915 * 180.11024 * 16 15 14 25 25 H 1.08000 * 125.47174 * 179.81870 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 6 2.0324 -0.7104 1.2304 13 8 2.3211 -1.8887 1.1759 14 6 2.1673 -0.0055 2.4477 15 6 2.6075 -0.5292 3.6470 16 6 2.5829 0.5216 4.5735 17 6 2.1317 1.6188 3.9233 18 8 1.8832 1.2994 2.6476 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 0.7011 1.1560 -3.4844 23 1 2.9131 -1.5481 3.8336 24 1 2.8669 0.4652 5.6141 25 1 1.9948 2.5958 4.3628 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049804782.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:37 Heat of formation + Delta-G solvation = -47.010022 kcal Electronic energy + Delta-G solvation = -11819.280969 eV Core-core repulsion = 9570.964267 eV Total energy + Delta-G solvation = -2248.316703 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.57669 -40.17669 -35.87733 -34.02061 -32.78602 -30.84416 -27.30441 -25.81160 -23.06451 -22.52061 -20.61610 -18.57814 -18.20723 -17.24707 -16.96526 -16.39979 -15.53342 -15.14005 -14.57407 -14.12922 -13.92384 -13.61983 -13.45498 -13.03696 -12.70333 -12.68655 -12.27598 -12.09670 -11.10996 -10.99931 -10.63279 -10.39971 -9.61957 -8.16694 -6.30618 -0.19008 1.40445 1.42182 1.43426 1.51441 2.02651 2.02838 2.41511 3.11467 3.47864 3.96762 4.02261 4.52669 4.65144 4.70143 4.90138 4.94170 4.98233 5.01689 5.39269 5.48295 5.64726 5.86721 5.99441 6.18451 6.69372 6.78512 7.37142 8.89002 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.065627 B = 0.009969 C = 0.009271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.551310 B = 2808.118926 C = 3019.554337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.000 4.000 3 H 0.036 0.964 4 C -0.538 4.538 5 H 0.050 0.950 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.272 1.272 12 C 0.433 3.567 13 O -0.487 6.487 14 C -0.141 4.141 15 C -0.120 4.120 16 C -0.232 4.232 17 C 0.012 3.988 18 O -0.167 6.167 19 H 0.025 0.975 20 H 0.038 0.962 21 H 0.075 0.925 22 H 0.266 0.734 23 H 0.162 0.838 24 H 0.194 0.806 25 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 3.181 12.392 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.019 4.019 3 H 0.054 0.946 4 C -0.576 4.576 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.786 3.214 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.197 1.197 12 C 0.315 3.685 13 O -0.367 6.367 14 C -0.191 4.191 15 C -0.140 4.140 16 C -0.250 4.250 17 C -0.058 4.058 18 O -0.061 6.061 19 H 0.044 0.956 20 H 0.057 0.943 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.180 0.820 24 H 0.212 0.788 25 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 1.330 2.881 11.972 12.385 hybrid contribution 0.288 -0.475 -0.805 0.979 sum 1.618 2.406 11.167 11.537 Atomic orbital electron populations 1.21452 0.95039 0.99367 1.01317 1.19114 0.95372 0.96231 0.91216 0.94601 1.21261 1.32266 1.12816 0.91275 0.93197 1.25695 0.94967 0.95688 1.01718 1.69965 1.36891 1.23630 1.24535 0.85570 0.78810 0.78688 0.78355 1.19954 1.19855 1.19720 1.20670 0.72370 0.87222 0.88197 1.90434 1.41616 1.17879 1.86743 1.21934 1.14589 0.83868 0.98692 1.22817 0.97997 1.01936 0.91240 1.22234 1.08432 0.91623 1.02755 1.25661 0.97430 1.02662 0.80018 1.84166 1.65729 1.25362 1.30875 0.95598 0.94271 0.90590 0.92440 0.82023 0.78845 0.72518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.78 8.95 71.98 0.64 -5.14 15 2 C 0.00 -0.02 2.40 -12.29 -0.03 -0.05 15 3 H 0.04 2.04 8.01 -2.38 -0.02 2.02 15 4 C -0.54 -32.11 8.34 25.60 0.21 -31.90 15 5 H 0.05 3.08 7.03 -2.91 -0.02 3.06 15 6 C 0.02 1.07 5.30 84.66 0.45 1.52 15 7 N -0.91 -52.90 11.31 21.45 0.24 -52.66 15 8 Si 0.96 45.29 29.54 68.60 2.03 47.32 15 9 H -0.27 -12.79 7.11 99.48 0.71 -12.09 15 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 11 H -0.27 -12.55 7.11 99.48 0.71 -11.85 15 12 C 0.43 21.36 6.04 26.44 0.16 21.52 15 13 O -0.49 -25.95 16.25 -3.51 -0.06 -26.00 15 14 C -0.14 -5.65 6.88 22.99 0.16 -5.49 15 15 C -0.12 -3.80 10.61 22.69 0.24 -3.56 15 16 C -0.23 -5.14 10.86 22.04 0.24 -4.90 15 17 C 0.01 0.27 12.06 67.14 0.81 1.08 15 18 O -0.17 -5.81 10.37 -5.35 -0.06 -5.87 15 19 H 0.02 1.28 8.14 -2.38 -0.02 1.26 15 20 H 0.04 1.72 8.14 -2.39 -0.02 1.70 15 21 H 0.08 4.13 6.06 -2.39 -0.01 4.12 15 22 H 0.27 14.54 8.31 -92.70 -0.77 13.77 15 23 H 0.16 4.78 8.06 -2.91 -0.02 4.76 15 24 H 0.19 2.59 8.06 -2.91 -0.02 2.57 15 25 H 0.26 2.59 8.06 -2.91 -0.02 2.57 15 Total: -1.00 -69.95 230.10 6.23 -63.73 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: 1.19 Total: 0.39 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 2.88 Total: -26.91 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.24 Total: -52.66 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.11 Total: -31.87 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -69.95 6.23 -63.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049804782.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.716 kcal (2) G-P(sol) polarization free energy of solvation -69.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds