Wall clock time and date at job start Mon Mar 30 2020 01:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 120.00165 * 2 1 4 4 N 1.32118 * 120.00091 * 179.97438 * 3 2 1 5 5 C 1.32154 * 119.99692 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99920 * 179.72668 * 5 4 3 7 7 N 1.46501 * 109.47318 * 275.00357 * 6 5 4 8 8 C 1.36936 * 120.00201 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99858 * 0.02562 * 8 7 6 10 10 C 1.38813 * 119.99757 * 179.97438 * 8 7 6 11 11 N 1.31616 * 120.00539 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99479 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47272 * 90.00375 * 12 10 8 14 14 H 1.48502 * 109.46642 * 210.00072 * 12 10 8 15 15 H 1.48496 * 109.47394 * 329.99830 * 12 10 8 16 16 C 1.38342 * 120.00353 * 0.02562 * 5 4 3 17 17 N 1.32124 * 120.00069 * 179.97438 * 2 1 3 18 18 H 1.09003 * 109.46587 * 90.00880 * 1 2 3 19 19 H 1.08998 * 109.47245 * 210.00431 * 1 2 3 20 20 H 1.08997 * 109.47657 * 330.01020 * 1 2 3 21 21 H 1.08001 * 119.99856 * 359.97438 * 3 2 1 22 22 H 1.08999 * 109.47209 * 35.00003 * 6 5 4 23 23 H 1.08994 * 109.47427 * 155.00146 * 6 5 4 24 24 H 0.97003 * 119.99780 * 359.97438 * 7 6 5 25 25 H 0.96998 * 119.99988 * 180.02562 * 11 10 8 26 26 H 1.08001 * 119.99992 * 179.97438 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6879 0.0538 -0.0041 7 7 6.1711 0.1700 -1.3822 8 6 7.5165 0.1915 -1.6366 9 1 8.2213 0.1224 -0.8212 10 6 7.9742 0.3011 -2.9425 11 7 7.1153 0.3849 -3.9362 12 14 9.8096 0.3298 -3.2894 13 1 10.2955 -1.0577 -3.4986 14 1 10.0701 1.1348 -4.5098 15 1 10.5221 0.9351 -2.1357 16 6 3.4891 -1.1442 0.0015 17 7 2.1677 -1.1442 0.0005 18 1 -0.3632 -0.0002 -1.0277 19 1 -0.3633 -0.8899 0.5139 20 1 -0.3634 0.8900 0.5136 21 1 1.6590 2.1338 -0.0004 22 1 6.0535 0.8974 0.5814 23 1 6.0528 -0.8762 0.4316 24 1 5.5380 0.2318 -2.1146 25 1 7.4353 0.4611 -4.8487 26 1 4.0291 -2.0795 0.0020 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061321299.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:56 Heat of formation + Delta-G solvation = 53.600524 kcal Electronic energy + Delta-G solvation = -11293.271656 eV Core-core repulsion = 9179.329167 eV Total energy + Delta-G solvation = -2113.942489 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.83115 -35.33780 -33.85396 -32.70655 -30.98610 -28.27867 -25.09399 -24.37443 -22.86878 -21.29788 -17.45348 -17.36266 -15.89830 -15.41398 -14.96585 -14.48215 -13.49150 -13.34952 -12.76517 -12.66293 -12.48781 -12.35049 -11.65475 -11.24290 -10.96984 -10.82767 -10.77385 -10.12632 -9.80608 -8.95238 -8.78614 -8.71798 -6.98057 -5.78011 -3.08721 1.02604 1.42759 3.43906 3.48507 3.50819 3.91664 4.24273 4.48415 4.61107 4.72558 4.96620 5.29872 5.48777 5.50650 5.55523 5.65650 5.74747 5.95548 6.08086 6.42489 6.59883 6.68792 7.58433 7.67418 8.11041 8.38375 9.50235 10.03534 10.39212 11.44632 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.082308 B = 0.007461 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.102752 B = 3751.779014 C = 3809.898595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.060 3.940 3 C 0.049 3.951 4 N -0.423 5.423 5 C 0.084 3.916 6 C 0.202 3.798 7 N -0.724 5.724 8 C -0.243 4.243 9 H 0.074 0.926 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.911 3.089 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.066 3.934 17 N -0.444 5.444 18 H 0.078 0.922 19 H 0.076 0.924 20 H 0.076 0.924 21 H 0.164 0.836 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.385 0.615 25 H 0.256 0.744 26 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.839 -0.784 8.228 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.112 4.112 4 N -0.137 5.137 5 C -0.056 4.056 6 C 0.074 3.926 7 N -0.369 5.369 8 C -0.373 4.373 9 H 0.092 0.908 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.742 3.258 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.094 4.094 17 N -0.159 5.159 18 H 0.097 0.903 19 H 0.095 0.905 20 H 0.094 0.906 21 H 0.181 0.819 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.218 0.782 25 H 0.066 0.934 26 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.641 -0.772 8.251 13.488 hybrid contribution 0.782 0.085 -0.612 0.997 sum -9.859 -0.687 7.640 12.492 Atomic orbital electron populations 1.20615 0.88171 1.03393 1.03189 1.22246 0.98207 0.90048 0.97616 1.23596 0.90996 0.98882 0.97740 1.68364 1.08127 1.29871 1.07371 1.22740 0.99334 0.89078 0.94462 1.19569 0.83250 0.99626 0.90202 1.42233 1.04991 1.89100 1.00552 1.19233 0.82857 1.42955 0.92296 0.90781 1.24775 0.97851 1.02606 0.95544 1.69678 1.32703 1.56900 0.98729 0.86130 0.84756 0.77466 0.77459 1.21617 1.21738 1.20630 1.23643 0.90107 0.99736 0.95950 1.68258 1.08956 1.29283 1.09432 0.90297 0.90540 0.90556 0.81925 0.94033 0.94117 0.78182 0.93414 0.81296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 10.19 36.01 0.37 -0.56 15 2 C 0.06 0.85 6.79 -82.41 -0.56 0.29 15 3 C 0.05 0.73 10.88 -17.37 -0.19 0.54 15 4 N -0.42 -7.94 10.42 -9.29 -0.10 -8.04 15 5 C 0.08 1.60 6.15 -82.41 -0.51 1.09 15 6 C 0.20 4.24 6.59 -5.19 -0.03 4.20 15 7 N -0.72 -18.99 5.59 -61.09 -0.34 -19.33 15 8 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 15 9 H 0.07 2.00 7.83 -52.49 -0.41 1.58 15 10 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 15 11 N -0.93 -28.75 13.06 55.49 0.72 -28.03 15 12 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 15 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 16 C 0.07 1.13 10.86 -17.38 -0.19 0.94 15 17 N -0.44 -7.26 10.42 -9.29 -0.10 -7.35 15 18 H 0.08 0.70 8.14 -51.93 -0.42 0.28 15 19 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.08 0.54 8.09 -51.93 -0.42 0.12 15 21 H 0.16 1.84 8.06 -52.49 -0.42 1.41 15 22 H 0.04 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.04 0.79 8.05 -51.93 -0.42 0.37 15 24 H 0.38 10.88 7.66 -40.82 -0.31 10.56 15 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 26 H 0.17 2.54 8.06 -52.49 -0.42 2.11 15 LS Contribution 237.81 15.07 3.58 3.58 Total: -1.00 -32.57 237.81 -5.42 -37.99 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -2.81 Total: 4.62 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.36 Total: -0.94 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 0.19 Total: -62.75 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.57 -5.42 -37.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061321299.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.587 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds