Wall clock time and date at job start Mon Mar 30 2020 01:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 120.00165 * 2 1 4 4 N 1.32118 * 120.00091 * 179.97438 * 3 2 1 5 5 C 1.32154 * 119.99692 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99920 * 179.72668 * 5 4 3 7 7 N 1.46501 * 109.47318 * 275.00357 * 6 5 4 8 8 C 1.36936 * 120.00201 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99858 * 0.02562 * 8 7 6 10 10 C 1.38813 * 119.99757 * 179.97438 * 8 7 6 11 11 N 1.31616 * 120.00539 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99479 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47272 * 90.00375 * 12 10 8 14 14 H 1.48502 * 109.46642 * 210.00072 * 12 10 8 15 15 H 1.48496 * 109.47394 * 329.99830 * 12 10 8 16 16 C 1.38342 * 120.00353 * 0.02562 * 5 4 3 17 17 N 1.32124 * 120.00069 * 179.97438 * 2 1 3 18 18 H 1.09003 * 109.46587 * 90.00880 * 1 2 3 19 19 H 1.08998 * 109.47245 * 210.00431 * 1 2 3 20 20 H 1.08997 * 109.47657 * 330.01020 * 1 2 3 21 21 H 1.08001 * 119.99856 * 359.97438 * 3 2 1 22 22 H 1.08999 * 109.47209 * 35.00003 * 6 5 4 23 23 H 1.08994 * 109.47427 * 155.00146 * 6 5 4 24 24 H 0.97003 * 119.99780 * 359.97438 * 7 6 5 25 25 H 0.96998 * 119.99988 * 180.02562 * 11 10 8 26 26 H 1.08001 * 119.99992 * 179.97438 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6879 0.0538 -0.0041 7 7 6.1711 0.1700 -1.3822 8 6 7.5165 0.1915 -1.6366 9 1 8.2213 0.1224 -0.8212 10 6 7.9742 0.3011 -2.9425 11 7 7.1153 0.3849 -3.9362 12 14 9.8096 0.3298 -3.2894 13 1 10.2955 -1.0577 -3.4986 14 1 10.0701 1.1348 -4.5098 15 1 10.5221 0.9351 -2.1357 16 6 3.4891 -1.1442 0.0015 17 7 2.1677 -1.1442 0.0005 18 1 -0.3632 -0.0002 -1.0277 19 1 -0.3633 -0.8899 0.5139 20 1 -0.3634 0.8900 0.5136 21 1 1.6590 2.1338 -0.0004 22 1 6.0535 0.8974 0.5814 23 1 6.0528 -0.8762 0.4316 24 1 5.5380 0.2318 -2.1146 25 1 7.4353 0.4611 -4.8487 26 1 4.0291 -2.0795 0.0020 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061321299.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:56 Heat of formation + Delta-G solvation = 29.425563 kcal Electronic energy + Delta-G solvation = -11294.319961 eV Core-core repulsion = 9179.329167 eV Total energy + Delta-G solvation = -2114.990794 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.09174 -37.02718 -35.36379 -34.12608 -32.75417 -29.72787 -26.71390 -25.63151 -24.64131 -22.73523 -19.42337 -18.73304 -17.27092 -16.77017 -16.54741 -16.01666 -15.26132 -15.06798 -14.25784 -13.93488 -13.63352 -13.30944 -13.13470 -12.87045 -12.76482 -12.53356 -12.12918 -12.10094 -11.87431 -11.02614 -10.04233 -10.00879 -9.08712 -7.97766 -5.29433 -0.22211 0.15252 1.48122 1.50734 1.59324 2.51447 2.70007 3.10438 3.25202 3.37181 3.53545 3.84128 4.11548 4.16977 4.26080 4.52598 4.79104 4.81562 4.88049 4.95683 5.13509 5.46691 5.48710 6.21257 6.33959 6.84308 7.28088 7.96580 8.22822 9.26087 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.082308 B = 0.007461 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.102752 B = 3751.779014 C = 3809.898595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.069 3.931 3 C 0.046 3.954 4 N -0.455 5.455 5 C 0.057 3.943 6 C 0.204 3.796 7 N -0.737 5.737 8 C -0.248 4.248 9 H 0.085 0.915 10 C -0.075 4.075 11 N -0.973 5.973 12 Si 0.982 3.018 13 H -0.283 1.283 14 H -0.296 1.296 15 H -0.267 1.267 16 C 0.063 3.937 17 N -0.458 5.458 18 H 0.092 0.908 19 H 0.081 0.919 20 H 0.108 0.892 21 H 0.201 0.799 22 H 0.035 0.965 23 H 0.060 0.940 24 H 0.370 0.630 25 H 0.252 0.748 26 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.761 -0.700 9.052 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.072 4.072 3 C -0.116 4.116 4 N -0.170 5.170 5 C -0.082 4.082 6 C 0.077 3.923 7 N -0.380 5.380 8 C -0.380 4.380 9 H 0.103 0.897 10 C -0.267 4.267 11 N -0.623 5.623 12 Si 0.810 3.190 13 H -0.210 1.210 14 H -0.223 1.223 15 H -0.191 1.191 16 C -0.096 4.096 17 N -0.174 5.174 18 H 0.110 0.890 19 H 0.100 0.900 20 H 0.127 0.873 21 H 0.218 0.782 22 H 0.053 0.947 23 H 0.078 0.922 24 H 0.201 0.799 25 H 0.061 0.939 26 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.541 -0.713 9.131 14.734 hybrid contribution 0.887 0.092 -0.788 1.190 sum -10.654 -0.621 8.344 13.547 Atomic orbital electron populations 1.20798 0.84461 1.05324 1.04501 1.23067 1.00474 0.89161 0.94543 1.24264 0.89840 1.00914 0.96551 1.68263 1.10226 1.30243 1.08247 1.22378 0.98208 0.90104 0.97495 1.19595 0.85295 0.99914 0.87457 1.42418 1.04211 1.89119 1.02269 1.19707 0.84149 1.41388 0.92719 0.89724 1.25671 1.02469 1.03158 0.95437 1.69850 1.34778 1.58847 0.98862 0.85027 0.79350 0.77455 0.77210 1.20998 1.22307 1.19121 1.23751 0.90693 0.99530 0.95611 1.68376 1.08455 1.30387 1.10201 0.89000 0.89976 0.87332 0.78183 0.94713 0.92246 0.79898 0.93925 0.80155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 10.19 71.24 0.73 -0.71 15 2 C 0.07 1.81 6.79 42.55 0.29 2.09 15 3 C 0.05 1.28 10.88 84.69 0.92 2.20 15 4 N -0.45 -16.85 10.42 -183.30 -1.91 -18.76 15 5 C 0.06 2.16 6.15 42.54 0.26 2.43 15 6 C 0.20 8.67 6.59 85.63 0.56 9.23 15 7 N -0.74 -39.29 5.59 -347.18 -1.94 -41.23 15 8 C -0.25 -14.13 9.99 84.03 0.84 -13.29 15 9 H 0.08 4.52 7.83 -2.91 -0.02 4.49 15 10 C -0.08 -4.40 5.50 84.86 0.47 -3.93 15 11 N -0.97 -61.15 13.06 21.65 0.28 -60.87 15 12 Si 0.98 46.50 29.55 68.60 2.03 48.53 15 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 15 14 H -0.30 -14.18 7.11 99.48 0.71 -13.47 15 15 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 16 C 0.06 2.12 10.86 84.67 0.92 3.04 15 17 N -0.46 -14.33 10.42 -183.30 -1.91 -16.24 15 18 H 0.09 1.28 8.14 -2.39 -0.02 1.26 15 19 H 0.08 1.23 8.14 -2.39 -0.02 1.21 15 20 H 0.11 1.02 8.09 -2.39 -0.02 1.00 15 21 H 0.20 3.83 8.06 -2.91 -0.02 3.81 15 22 H 0.03 1.51 8.14 -2.39 -0.02 1.49 15 23 H 0.06 2.28 8.05 -2.39 -0.02 2.26 15 24 H 0.37 21.50 7.66 -92.71 -0.71 20.79 15 25 H 0.25 15.27 8.31 -92.71 -0.77 14.50 15 26 H 0.18 5.38 8.06 -2.91 -0.02 5.35 15 Total: -1.00 -70.33 237.81 2.01 -68.32 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.47 Total: 19.20 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 4.99 Total: 1.06 kcal Atomic # 7 Polarization: -131.63 SS G_CDS: -5.48 Total: -137.11 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -70.33 2.01 -68.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061321299.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.745 kcal (2) G-P(sol) polarization free energy of solvation -70.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds