Wall clock time and date at job start Mon Mar 30 2020 02:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29567 * 1 3 3 Si 1.86799 * 120.00091 * 2 1 4 4 H 1.48502 * 109.46811 * 269.99437 * 3 2 1 5 5 H 1.48495 * 109.47412 * 29.99296 * 3 2 1 6 6 H 1.48497 * 109.47336 * 149.99688 * 3 2 1 7 7 C 1.46393 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00104 * 188.19603 * 7 2 1 9 9 C 1.41162 * 120.00212 * 8.19541 * 7 2 1 10 10 C 1.41266 * 121.06955 * 31.83983 * 9 7 2 11 11 C 1.37970 * 118.81085 * 179.97438 * 10 9 7 12 12 N 1.31837 * 121.05323 * 359.97438 * 11 10 9 13 13 C 1.31795 * 122.42537 * 0.02562 * 12 11 10 14 14 C 1.38028 * 121.05235 * 0.25240 * 13 12 11 15 15 N 1.48008 * 120.59944 * 179.73090 * 14 13 12 16 16 O 1.31699 * 120.00228 * 5.78332 * 15 14 13 17 17 O 1.31702 * 119.99785 * 185.78907 * 15 14 13 18 18 H 0.97001 * 120.00277 * 0.02562 * 1 2 3 19 19 H 1.07999 * 120.59518 * 359.97438 * 10 9 7 20 20 H 1.08003 * 119.47837 * 180.02562 * 11 10 9 21 21 H 1.08009 * 119.47710 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2957 0.0000 0.0000 3 14 2.2297 1.6177 0.0000 4 1 2.4773 2.0463 -1.4001 5 1 1.4272 2.6527 0.6999 6 1 3.5272 1.4402 0.7001 7 6 2.0276 -1.2678 0.0006 8 1 3.0994 -1.2725 0.1339 9 6 1.3327 -2.4842 -0.1732 10 6 0.1669 -2.5506 -0.9682 11 6 -0.4753 -3.7639 -1.1066 12 7 -0.0169 -4.8476 -0.5121 13 6 1.0658 -4.8372 0.2393 14 6 1.7778 -3.6729 0.4460 15 7 2.9890 -3.6714 1.2965 16 8 3.4618 -4.8053 1.7712 17 8 3.5940 -2.5361 1.5788 18 1 -0.4850 0.8400 -0.0004 19 1 -0.2149 -1.6675 -1.4589 20 1 -1.3673 -3.8271 -1.7123 21 1 1.3988 -5.7533 0.7045 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063046426.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:56 Heat of formation + Delta-G solvation = 32.939889 kcal Electronic energy + Delta-G solvation = -11648.617397 eV Core-core repulsion = 9300.227240 eV Total energy + Delta-G solvation = -2348.390158 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.048 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.06803 -36.83208 -34.77832 -32.78883 -31.51233 -30.30705 -26.84258 -24.91223 -22.15708 -21.22994 -18.49032 -16.81585 -16.61622 -16.02338 -14.95973 -14.70850 -14.41246 -13.32820 -13.10618 -12.65352 -12.07419 -11.78750 -11.65133 -11.07428 -10.71192 -10.09992 -9.71265 -9.51605 -9.25265 -8.77309 -8.56246 -8.38252 -7.71027 -5.33095 0.81116 2.26950 2.52915 2.68347 2.75508 2.85141 2.90981 3.40802 3.91361 4.86673 5.32853 5.76339 5.98070 6.05483 6.15611 6.49982 6.70656 6.95096 7.28413 7.32141 7.67603 7.87608 7.96659 8.50548 8.93303 9.12648 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.035493 B = 0.016317 C = 0.011486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.692014 B = 1715.574592 C = 2437.213057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.057 3.943 3 Si 0.939 3.061 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.242 1.242 7 C -0.329 4.329 8 H 0.130 0.870 9 C 0.098 3.902 10 C -0.175 4.175 11 C 0.074 3.926 12 N -0.546 5.546 13 C 0.197 3.803 14 C -0.153 4.153 15 N 0.043 4.957 16 O -0.327 6.327 17 O -0.260 6.260 18 H 0.306 0.694 19 H 0.137 0.863 20 H 0.138 0.862 21 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 4.362 -3.320 5.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.175 4.175 3 Si 0.760 3.240 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.165 1.165 7 C -0.357 4.357 8 H 0.148 0.852 9 C 0.090 3.910 10 C -0.197 4.197 11 C -0.066 4.066 12 N -0.264 5.264 13 C 0.028 3.972 14 C -0.258 4.258 15 N 0.472 4.528 16 O -0.478 6.478 17 O -0.427 6.427 18 H 0.119 0.881 19 H 0.154 0.846 20 H 0.156 0.844 21 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.064 3.652 -3.651 6.005 hybrid contribution 0.853 1.456 0.387 1.731 sum -2.211 5.108 -3.264 6.453 Atomic orbital electron populations 1.69092 1.09271 1.32780 1.22578 1.28015 0.95018 1.03503 0.90927 0.85728 0.81303 0.76548 0.80459 1.18062 1.19085 1.16473 1.22405 0.97769 0.88201 1.27321 0.85221 1.17483 0.92244 0.91027 0.90207 1.22382 0.97470 0.98427 1.01385 1.22319 0.98255 0.88819 0.97214 1.67617 1.14011 1.30950 1.13827 1.22105 0.88630 0.95430 0.91062 1.21342 0.94479 0.99391 1.10548 1.49771 1.01859 1.01289 0.99845 1.96099 1.72513 1.16371 1.62851 1.96069 1.62094 1.15592 1.68948 0.88135 0.84560 0.84420 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -14.78 11.17 55.98 0.62 -14.15 14 2 C 0.06 1.19 5.47 -15.23 -0.08 1.10 14 3 Si 0.94 15.51 29.65 -169.99 -5.04 10.47 14 4 H -0.26 -4.05 7.11 56.52 0.40 -3.65 14 5 H -0.27 -4.20 7.11 56.52 0.40 -3.80 14 6 H -0.24 -4.19 7.11 56.52 0.40 -3.79 14 7 C -0.33 -7.85 8.10 -35.19 -0.28 -8.14 14 8 H 0.13 3.19 5.84 -52.48 -0.31 2.89 14 9 C 0.10 2.42 5.58 -106.50 -0.59 1.83 14 10 C -0.17 -3.88 8.83 -38.53 -0.34 -4.22 14 11 C 0.07 1.55 11.16 -17.65 -0.20 1.35 14 12 N -0.55 -12.16 10.31 -13.38 -0.14 -12.30 14 13 C 0.20 4.59 10.73 -17.64 -0.19 4.40 14 14 C -0.15 -3.91 6.97 -78.89 -0.55 -4.46 14 15 N 0.04 1.18 4.98 34.47 0.17 1.35 14 16 O -0.33 -8.95 19.21 -31.57 -0.61 -9.55 14 17 O -0.26 -7.20 16.38 -31.57 -0.52 -7.72 14 18 H 0.31 5.41 8.27 -40.82 -0.34 5.08 14 19 H 0.14 2.88 6.55 -52.49 -0.34 2.54 14 20 H 0.14 2.37 8.06 -52.48 -0.42 1.95 14 21 H 0.15 3.22 7.61 -52.48 -0.40 2.82 14 LS Contribution 206.18 15.07 3.11 3.11 Total: -1.00 -27.65 206.18 -5.24 -32.89 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -0.61 Total: 4.04 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -2.24 Total: -8.13 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.66 Total: -25.10 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -1.12 Total: -17.27 kcal Atomic # 14 Polarization: 15.51 SS G_CDS: -5.04 Total: 10.47 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -27.65 -5.24 -32.89 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046426.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.829 kcal (2) G-P(sol) polarization free energy of solvation -27.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds