Wall clock time and date at job start Mon Mar 30 2020 02:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29567 * 1 3 3 Si 1.86799 * 120.00091 * 2 1 4 4 H 1.48502 * 109.46811 * 269.99437 * 3 2 1 5 5 H 1.48495 * 109.47412 * 29.99296 * 3 2 1 6 6 H 1.48497 * 109.47336 * 149.99688 * 3 2 1 7 7 C 1.46393 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00104 * 188.19603 * 7 2 1 9 9 C 1.41162 * 120.00212 * 8.19541 * 7 2 1 10 10 C 1.41266 * 121.06955 * 31.83983 * 9 7 2 11 11 C 1.37970 * 118.81085 * 179.97438 * 10 9 7 12 12 N 1.31837 * 121.05323 * 359.97438 * 11 10 9 13 13 C 1.31795 * 122.42537 * 0.02562 * 12 11 10 14 14 C 1.38028 * 121.05235 * 0.25240 * 13 12 11 15 15 N 1.48008 * 120.59944 * 179.73090 * 14 13 12 16 16 O 1.31699 * 120.00228 * 5.78332 * 15 14 13 17 17 O 1.31702 * 119.99785 * 185.78907 * 15 14 13 18 18 H 0.97001 * 120.00277 * 0.02562 * 1 2 3 19 19 H 1.07999 * 120.59518 * 359.97438 * 10 9 7 20 20 H 1.08003 * 119.47837 * 180.02562 * 11 10 9 21 21 H 1.08009 * 119.47710 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2957 0.0000 0.0000 3 14 2.2297 1.6177 0.0000 4 1 2.4773 2.0463 -1.4001 5 1 1.4272 2.6527 0.6999 6 1 3.5272 1.4402 0.7001 7 6 2.0276 -1.2678 0.0006 8 1 3.0994 -1.2725 0.1339 9 6 1.3327 -2.4842 -0.1732 10 6 0.1669 -2.5506 -0.9682 11 6 -0.4753 -3.7639 -1.1066 12 7 -0.0169 -4.8476 -0.5121 13 6 1.0658 -4.8372 0.2393 14 6 1.7778 -3.6729 0.4460 15 7 2.9890 -3.6714 1.2965 16 8 3.4618 -4.8053 1.7712 17 8 3.5940 -2.5361 1.5788 18 1 -0.4850 0.8400 -0.0004 19 1 -0.2149 -1.6675 -1.4589 20 1 -1.3673 -3.8271 -1.7123 21 1 1.3988 -5.7533 0.7045 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063046426.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:56 Heat of formation + Delta-G solvation = 15.630092 kcal Electronic energy + Delta-G solvation = -11649.368007 eV Core-core repulsion = 9300.227240 eV Total energy + Delta-G solvation = -2349.140767 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.048 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.88011 -38.71624 -36.55496 -34.72090 -33.33871 -32.10271 -28.70482 -26.80318 -23.95157 -23.05662 -20.27484 -18.72033 -18.50703 -17.73676 -16.62322 -16.45836 -16.33246 -15.03023 -14.63719 -14.44810 -13.82230 -13.52629 -13.10688 -12.84882 -12.08725 -11.72649 -11.65621 -11.37843 -11.29888 -10.60530 -10.40328 -10.18384 -9.38899 -7.19807 -1.17257 0.56184 0.66923 1.03220 1.29506 1.44016 1.49811 2.05709 2.24451 3.05168 3.62950 4.01361 4.16109 4.33079 4.43437 4.71835 4.92947 5.13517 5.46071 5.50928 5.85980 5.96407 6.11993 6.55278 7.14626 7.49328 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.035493 B = 0.016317 C = 0.011486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.692014 B = 1715.574592 C = 2437.213057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.024 3.976 3 Si 1.006 2.994 4 H -0.237 1.237 5 H -0.244 1.244 6 H -0.262 1.262 7 C -0.304 4.304 8 H 0.116 0.884 9 C 0.050 3.950 10 C -0.165 4.165 11 C 0.067 3.933 12 N -0.531 5.531 13 C 0.190 3.810 14 C -0.157 4.157 15 N 0.043 4.957 16 O -0.382 6.382 17 O -0.323 6.323 18 H 0.329 0.671 19 H 0.150 0.850 20 H 0.182 0.818 21 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 6.583 -4.844 9.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.208 4.208 3 Si 0.822 3.178 4 H -0.160 1.160 5 H -0.167 1.167 6 H -0.186 1.186 7 C -0.333 4.333 8 H 0.134 0.866 9 C 0.043 3.957 10 C -0.186 4.186 11 C -0.072 4.072 12 N -0.250 5.250 13 C 0.017 3.983 14 C -0.266 4.266 15 N 0.448 4.552 16 O -0.518 6.518 17 O -0.472 6.472 18 H 0.143 0.857 19 H 0.168 0.832 20 H 0.199 0.801 21 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.038 5.857 -5.090 9.251 hybrid contribution 1.155 1.000 0.645 1.658 sum -3.883 6.857 -4.445 9.047 Atomic orbital electron populations 1.68990 1.09988 1.35378 1.18932 1.28818 0.95951 1.05154 0.90843 0.84806 0.79101 0.72502 0.81417 1.16021 1.16732 1.18627 1.22871 0.97726 0.89951 1.22720 0.86602 1.17901 0.94261 0.91219 0.92365 1.22526 0.96116 0.99541 1.00454 1.22928 0.99251 0.87791 0.97208 1.67719 1.12977 1.31605 1.12661 1.22308 0.88921 0.95371 0.91652 1.21763 0.93851 1.00599 1.10427 1.49816 1.02927 1.00813 1.01672 1.96037 1.73825 1.16598 1.65375 1.96002 1.63515 1.15947 1.71757 0.85669 0.83214 0.80069 0.82216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -26.63 11.17 23.18 0.26 -26.37 14 2 C 0.02 0.92 5.47 87.15 0.48 1.39 14 3 Si 1.01 28.91 29.65 68.60 2.03 30.95 14 4 H -0.24 -6.15 7.11 99.48 0.71 -5.45 14 5 H -0.24 -6.23 7.11 99.48 0.71 -5.52 14 6 H -0.26 -8.44 7.11 99.48 0.71 -7.73 14 7 C -0.30 -14.30 8.10 25.11 0.20 -14.10 14 8 H 0.12 5.81 5.84 -2.91 -0.02 5.79 14 9 C 0.05 2.44 5.58 -21.08 -0.12 2.32 14 10 C -0.16 -6.90 8.83 22.95 0.20 -6.70 14 11 C 0.07 2.57 11.16 84.63 0.94 3.52 14 12 N -0.53 -22.59 10.31 -196.23 -2.02 -24.61 14 13 C 0.19 8.82 10.73 84.65 0.91 9.72 14 14 C -0.16 -8.15 6.97 37.06 0.26 -7.89 14 15 N 0.04 2.45 4.98 -44.85 -0.22 2.22 14 16 O -0.38 -22.30 19.21 3.52 0.07 -22.23 14 17 O -0.32 -18.97 16.38 3.51 0.06 -18.91 14 18 H 0.33 10.06 8.27 -92.71 -0.77 9.30 14 19 H 0.15 5.78 6.55 -2.91 -0.02 5.76 14 20 H 0.18 5.35 8.06 -2.91 -0.02 5.33 14 21 H 0.16 6.98 7.61 -2.91 -0.02 6.96 14 Total: -1.00 -60.57 206.18 4.32 -56.25 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.27 Total: 14.43 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 2.88 Total: -11.73 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -1.99 Total: -48.76 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: 0.13 Total: -41.14 kcal Atomic # 14 Polarization: 28.91 SS G_CDS: 2.03 Total: 30.95 kcal Total: -60.57 4.32 -56.25 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046426.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.884 kcal (2) G-P(sol) polarization free energy of solvation -60.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds