Wall clock time and date at job start Mon Mar 30 2020 02:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36345 * 125.63310 * 2 1 4 4 C 1.34848 * 108.21855 * 180.02562 * 3 2 1 5 5 C 1.40895 * 107.41714 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.29128 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47211 * 89.97846 * 6 5 4 8 8 C 1.52990 * 109.47565 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47559 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99590 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00319 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99947 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00273 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46748 * 60.00066 * 13 11 9 15 15 H 1.48492 * 109.47195 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47062 * 300.00609 * 13 11 9 17 17 C 1.34844 * 107.41841 * 0.02562 * 5 4 3 18 18 H 1.08997 * 109.47501 * 269.97463 * 1 2 3 19 19 H 1.09004 * 109.47331 * 29.98008 * 1 2 3 20 20 H 1.09002 * 109.46732 * 149.97633 * 1 2 3 21 21 H 1.08001 * 125.88962 * 0.05572 * 3 2 1 22 22 H 1.07999 * 126.29387 * 180.26704 * 4 3 2 23 23 H 1.08991 * 109.47528 * 209.97807 * 6 5 4 24 24 H 1.09004 * 109.47059 * 329.98194 * 6 5 4 25 25 H 1.09007 * 109.47123 * 300.00070 * 7 6 5 26 26 H 1.09005 * 109.47235 * 59.99547 * 7 6 5 27 27 H 1.09005 * 109.47382 * 300.00297 * 8 7 6 28 28 H 1.09000 * 109.47364 * 59.99976 * 8 7 6 29 29 H 0.96997 * 119.99630 * 180.02562 * 12 11 9 30 30 H 1.07994 * 125.89572 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7044 -0.0003 6 6 4.7608 -1.5963 -0.0003 7 6 5.1723 -1.8975 1.4423 8 6 6.4058 -2.8024 1.4424 9 6 6.8115 -3.0986 2.8633 10 1 6.2457 -2.6832 3.6842 11 6 7.9042 -3.9006 3.1154 12 7 8.5929 -4.4069 2.1158 13 14 8.4067 -4.2683 4.8766 14 1 7.2903 -4.9524 5.5772 15 1 9.6040 -5.1465 4.8767 16 1 8.7252 -2.9976 5.5760 17 6 2.2595 -1.1081 -0.0002 18 1 -0.3634 -0.0005 1.0276 19 1 -0.3634 0.8902 -0.5135 20 1 -0.3633 -0.8898 -0.5142 21 1 1.9171 2.1325 0.0009 22 1 4.4165 1.3438 0.0033 23 1 4.5268 -2.5289 -0.5135 24 1 5.5803 -1.0941 -0.5145 25 1 5.4063 -0.9648 1.9556 26 1 4.3527 -2.3995 1.9566 27 1 6.1723 -3.7352 0.9289 28 1 7.2252 -2.3000 0.9283 29 1 9.3615 -4.9715 2.2932 30 1 1.9173 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082522595.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:04 Heat of formation + Delta-G solvation = 27.826637 kcal Electronic energy + Delta-G solvation = -11320.168501 eV Core-core repulsion = 9308.648716 eV Total energy + Delta-G solvation = -2011.519785 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.85053 -34.79500 -32.91652 -31.46691 -28.86738 -27.31874 -25.38039 -22.96298 -20.11636 -20.02008 -18.99401 -16.77463 -15.98334 -15.10242 -14.39694 -14.00653 -13.83665 -12.89180 -12.67692 -12.53588 -12.30615 -11.96527 -11.74480 -11.43345 -10.95259 -10.54638 -10.51881 -10.36416 -9.45392 -9.19541 -8.98394 -8.23568 -8.13827 -7.69584 -5.89161 -3.90679 2.51331 3.15419 3.36891 3.40054 3.43705 3.47029 4.55045 4.71800 5.05921 5.18167 5.27953 5.44284 5.46121 5.80635 5.86978 6.14124 6.39900 6.52609 6.62685 6.68205 7.03479 7.16921 7.30317 7.38798 7.54864 7.64034 7.82113 8.00533 8.13625 8.57267 9.16870 9.72479 11.22221 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.073023 B = 0.006118 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.351203 B = 4575.798110 C = 4685.289917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.460 5.460 3 C -0.027 4.027 4 C -0.194 4.194 5 C -0.145 4.145 6 C -0.050 4.050 7 C -0.100 4.100 8 C 0.019 3.981 9 C -0.517 4.517 10 H 0.053 0.947 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.891 3.109 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.026 4.026 18 H 0.067 0.933 19 H 0.077 0.923 20 H 0.079 0.921 21 H 0.155 0.845 22 H 0.133 0.867 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.259 0.741 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.573 8.503 -4.862 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.137 5.137 3 C -0.156 4.156 4 C -0.219 4.219 5 C -0.151 4.151 6 C -0.088 4.088 7 C -0.138 4.138 8 C -0.018 4.018 9 C -0.556 4.556 10 H 0.071 0.929 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.154 4.154 18 H 0.086 0.914 19 H 0.096 0.904 20 H 0.098 0.902 21 H 0.173 0.827 22 H 0.151 0.849 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.813 8.386 -4.902 17.714 hybrid contribution 0.268 -0.215 1.022 1.079 sum -14.545 8.171 -3.879 17.128 Atomic orbital electron populations 1.21910 0.78051 1.03729 1.02757 1.43868 1.05655 1.06305 1.57893 1.21692 0.90637 0.91101 1.12197 1.20867 0.95715 0.94958 1.10373 1.19805 0.94114 0.94185 1.07033 1.20107 0.93057 0.96645 0.99002 1.21577 0.99304 0.99742 0.93192 1.19136 0.91828 0.94196 0.96661 1.21279 1.11975 1.29517 0.92786 0.92873 1.25026 0.96551 0.96097 0.96855 1.69966 1.19226 1.33974 1.30581 0.86684 0.77869 0.78198 0.85390 1.20338 1.21344 1.20301 1.21624 0.90227 0.91089 1.12463 0.91413 0.90391 0.90235 0.82723 0.84948 0.92348 0.92017 0.93579 0.93808 0.96741 0.96668 0.93089 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 11.12 59.85 0.67 1.30 16 2 N -0.46 -6.01 3.15 -124.53 -0.39 -6.40 16 3 C -0.03 -0.37 11.43 -16.75 -0.19 -0.56 16 4 C -0.19 -3.10 10.81 -39.78 -0.43 -3.53 16 5 C -0.14 -2.52 5.39 -104.82 -0.57 -3.09 16 6 C -0.05 -0.96 5.72 -27.88 -0.16 -1.12 16 7 C -0.10 -2.26 5.13 -26.74 -0.14 -2.40 16 8 C 0.02 0.51 4.97 -27.89 -0.14 0.38 16 9 C -0.52 -15.37 9.11 -34.44 -0.31 -15.69 16 10 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -27.88 13.29 55.43 0.74 -27.14 16 13 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C -0.03 -0.40 11.35 -16.75 -0.19 -0.59 16 18 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 19 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 20 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 22 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.16 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 261.28 15.07 3.94 3.94 Total: -1.00 -33.06 261.28 -6.91 -39.97 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -4.61 Total: -3.95 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -1.56 Total: -23.75 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.34 Total: -33.54 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.06 -6.91 -39.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082522595.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.794 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds