Wall clock time and date at job start Mon Mar 30 2020 02:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36345 * 125.63310 * 2 1 4 4 C 1.34848 * 108.21855 * 180.02562 * 3 2 1 5 5 C 1.40895 * 107.41714 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.29128 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47211 * 89.97846 * 6 5 4 8 8 C 1.52990 * 109.47565 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47559 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99590 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00319 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99947 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00273 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46748 * 60.00066 * 13 11 9 15 15 H 1.48492 * 109.47195 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47062 * 300.00609 * 13 11 9 17 17 C 1.34844 * 107.41841 * 0.02562 * 5 4 3 18 18 H 1.08997 * 109.47501 * 269.97463 * 1 2 3 19 19 H 1.09004 * 109.47331 * 29.98008 * 1 2 3 20 20 H 1.09002 * 109.46732 * 149.97633 * 1 2 3 21 21 H 1.08001 * 125.88962 * 0.05572 * 3 2 1 22 22 H 1.07999 * 126.29387 * 180.26704 * 4 3 2 23 23 H 1.08991 * 109.47528 * 209.97807 * 6 5 4 24 24 H 1.09004 * 109.47059 * 329.98194 * 6 5 4 25 25 H 1.09007 * 109.47123 * 300.00070 * 7 6 5 26 26 H 1.09005 * 109.47235 * 59.99547 * 7 6 5 27 27 H 1.09005 * 109.47382 * 300.00297 * 8 7 6 28 28 H 1.09000 * 109.47364 * 59.99976 * 8 7 6 29 29 H 0.96997 * 119.99630 * 180.02562 * 12 11 9 30 30 H 1.07994 * 125.89572 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7044 -0.0003 6 6 4.7608 -1.5963 -0.0003 7 6 5.1723 -1.8975 1.4423 8 6 6.4058 -2.8024 1.4424 9 6 6.8115 -3.0986 2.8633 10 1 6.2457 -2.6832 3.6842 11 6 7.9042 -3.9006 3.1154 12 7 8.5929 -4.4069 2.1158 13 14 8.4067 -4.2683 4.8766 14 1 7.2903 -4.9524 5.5772 15 1 9.6040 -5.1465 4.8767 16 1 8.7252 -2.9976 5.5760 17 6 2.2595 -1.1081 -0.0002 18 1 -0.3634 -0.0005 1.0276 19 1 -0.3634 0.8902 -0.5135 20 1 -0.3633 -0.8898 -0.5142 21 1 1.9171 2.1325 0.0009 22 1 4.4165 1.3438 0.0033 23 1 4.5268 -2.5289 -0.5135 24 1 5.5803 -1.0941 -0.5145 25 1 5.4063 -0.9648 1.9556 26 1 4.3527 -2.3995 1.9566 27 1 6.1723 -3.7352 0.9289 28 1 7.2252 -2.3000 0.9283 29 1 9.3615 -4.9715 2.2932 30 1 1.9173 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082522595.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:04 Heat of formation + Delta-G solvation = 8.902183 kcal Electronic energy + Delta-G solvation = -11320.989127 eV Core-core repulsion = 9308.648716 eV Total energy + Delta-G solvation = -2012.340411 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.93828 -36.57269 -34.69803 -33.00273 -30.36273 -28.67175 -26.79524 -24.74975 -22.02091 -21.10664 -20.25063 -18.47875 -17.60937 -16.50600 -15.97118 -15.74458 -14.83894 -14.48346 -14.10874 -13.92019 -13.50718 -13.41455 -13.08004 -12.91978 -12.81415 -12.35521 -12.30335 -12.24069 -11.35663 -11.29032 -11.11270 -10.52934 -9.25895 -8.89537 -8.17489 -6.29385 1.39825 1.43223 1.43990 1.52045 2.12629 2.24197 2.43056 3.14325 4.06806 4.25837 4.26890 4.47229 4.49258 4.50798 4.72954 4.74728 4.80393 4.97797 5.09364 5.22333 5.31153 5.42524 5.56919 5.62678 5.83504 5.88538 6.14618 6.29193 6.38675 6.64601 6.87069 7.39423 8.94031 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.073023 B = 0.006118 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.351203 B = 4575.798110 C = 4685.289917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.456 5.456 3 C -0.012 4.012 4 C -0.229 4.229 5 C -0.182 4.182 6 C -0.039 4.039 7 C -0.083 4.083 8 C 0.022 3.978 9 C -0.546 4.546 10 H 0.056 0.944 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.267 1.267 17 C -0.028 4.028 18 H 0.079 0.921 19 H 0.103 0.897 20 H 0.093 0.907 21 H 0.192 0.808 22 H 0.130 0.870 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.044 0.956 27 H -0.007 1.007 28 H -0.010 1.010 29 H 0.264 0.736 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.395 9.240 -3.963 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.132 5.132 3 C -0.142 4.142 4 C -0.253 4.253 5 C -0.188 4.188 6 C -0.077 4.077 7 C -0.121 4.121 8 C -0.015 4.015 9 C -0.584 4.584 10 H 0.074 0.926 11 C -0.199 4.199 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.192 1.192 17 C -0.158 4.158 18 H 0.097 0.903 19 H 0.121 0.879 20 H 0.112 0.888 21 H 0.209 0.791 22 H 0.148 0.852 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.073 0.927 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.670 9.136 -4.008 19.427 hybrid contribution 0.780 -0.424 0.693 1.127 sum -15.890 8.711 -3.315 18.422 Atomic orbital electron populations 1.22277 0.74858 1.05807 1.04173 1.44210 1.07586 1.05380 1.56027 1.22190 0.89789 0.92714 1.09552 1.21038 0.97266 0.94492 1.12552 1.19707 0.94156 0.94773 1.10202 1.19868 0.94213 0.97280 0.96370 1.21348 0.96983 0.98113 0.95682 1.19056 0.93105 0.93872 0.95436 1.21695 1.12741 1.30211 0.93761 0.92553 1.26013 0.96306 0.95549 1.02002 1.70103 1.19681 1.34404 1.33246 0.85476 0.77826 0.78425 0.79169 1.19115 1.20515 1.19237 1.21817 0.89987 0.92456 1.11557 0.90251 0.87853 0.88810 0.79059 0.85157 0.92280 0.92800 0.94183 0.93766 0.98894 0.99166 0.92724 0.81134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 11.12 127.77 1.42 2.28 16 2 N -0.46 -10.64 3.15 -547.90 -1.72 -12.36 16 3 C -0.01 -0.30 11.43 83.21 0.95 0.65 16 4 C -0.23 -7.18 10.81 22.14 0.24 -6.94 16 5 C -0.18 -6.31 5.39 -19.99 -0.11 -6.42 16 6 C -0.04 -1.55 5.72 29.85 0.17 -1.38 16 7 C -0.08 -3.88 5.13 30.59 0.16 -3.72 16 8 C 0.02 1.27 4.97 29.85 0.15 1.42 16 9 C -0.55 -33.06 9.11 25.60 0.23 -32.82 16 10 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 11 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 12 N -0.93 -58.99 13.29 21.45 0.28 -58.70 16 13 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 C -0.03 -0.82 11.35 83.21 0.94 0.12 16 18 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 19 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 20 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 21 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 22 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 23 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 25 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 27 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 28 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 29 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.17 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -71.81 261.28 6.29 -65.52 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 1.08 Total: 4.09 kcal Atomic # 6 Polarization: -51.03 SS G_CDS: 4.62 Total: -46.41 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -1.44 Total: -71.06 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -71.81 6.29 -65.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082522595.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.423 kcal (2) G-P(sol) polarization free energy of solvation -71.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds