Wall clock time and date at job start Mon Mar 30 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 115.54918 * 2 1 4 4 C 1.53001 * 117.49599 * 214.29552 * 2 1 3 5 5 C 1.52993 * 59.99911 * 252.51292 * 4 2 1 6 6 H 1.09007 * 117.51447 * 252.51844 * 5 4 2 7 7 C 1.50697 * 117.50038 * 107.49517 * 5 4 2 8 8 N 1.31398 * 125.16000 * 351.39396 * 7 5 4 9 9 N 1.40454 * 107.18347 * 180.02562 * 8 7 5 10 10 H 0.96999 * 127.01886 * 179.97438 * 9 8 7 11 11 C 1.37023 * 105.96899 * 359.97438 * 9 8 7 12 12 C 1.40370 * 126.31885 * 180.02562 * 11 9 8 13 13 H 1.07997 * 119.99846 * 180.02562 * 12 11 9 14 14 C 1.40265 * 119.99798 * 0.02605 * 12 11 9 15 15 N 1.30647 * 120.00259 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99939 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47191 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.46768 * 299.99623 * 16 14 12 19 19 H 1.48498 * 109.47283 * 59.99874 * 16 14 12 20 20 N 1.32232 * 125.16195 * 171.70893 * 7 5 4 21 21 H 1.08997 * 109.46884 * 274.32600 * 1 2 3 22 22 H 1.09002 * 109.46765 * 34.32451 * 1 2 3 23 23 H 1.09002 * 109.47343 * 154.32566 * 1 2 3 24 24 H 1.08996 * 117.49985 * 145.01772 * 4 2 1 25 25 H 1.09005 * 117.49864 * 359.97438 * 4 2 1 26 26 H 0.97001 * 119.99897 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1212 -0.7647 5 6 2.2364 -1.1208 0.7652 6 1 3.1714 -0.8748 1.2687 7 6 1.3720 -2.1403 1.4613 8 7 0.4983 -2.9225 0.8688 9 7 -0.0910 -3.7168 1.8661 10 1 -0.7749 -4.3940 1.7452 11 6 0.4973 -3.3398 3.0448 12 6 0.2221 -3.8656 4.3169 13 1 0.7491 -3.4907 5.1817 14 6 -0.7374 -4.8781 4.4646 15 7 -1.3753 -5.3313 3.4184 16 14 -1.1042 -5.5774 6.1575 17 1 -2.1481 -6.6275 6.0437 18 1 0.1328 -6.1696 6.7270 19 1 -1.5884 -4.4917 7.0473 20 7 1.3735 -2.3792 2.7619 21 1 -0.3633 0.0775 1.0247 22 1 -0.3633 0.8487 -0.5795 23 1 -0.3634 -0.9262 -0.4452 24 1 3.1714 -0.8756 -1.2681 25 1 1.6111 -1.8591 -1.2675 26 1 -2.0385 -6.0317 3.5205 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083811096.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:16 Heat of formation + Delta-G solvation = 79.476143 kcal Electronic energy + Delta-G solvation = -11676.149326 eV Core-core repulsion = 9563.328888 eV Total energy + Delta-G solvation = -2112.820438 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.85997 -37.02248 -33.87629 -30.23402 -29.58223 -27.95560 -25.96926 -23.04027 -20.44726 -20.37917 -17.99834 -17.49644 -15.62993 -15.31978 -14.57638 -13.66752 -13.43527 -13.05939 -12.52306 -11.84514 -11.79875 -11.38827 -11.37467 -11.09953 -10.93771 -10.50853 -9.95766 -9.83081 -9.57562 -9.43466 -8.16946 -8.12921 -7.84352 -7.13485 -4.86723 2.86206 2.97483 3.01927 3.42646 3.76801 3.99139 4.61823 4.70799 5.20438 5.25942 5.35326 5.61411 5.79553 6.01103 6.21026 6.28561 6.32864 6.49017 6.61671 6.88988 6.96516 7.02945 7.62216 8.07757 8.24049 8.50418 8.56557 9.41690 9.92859 10.17768 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.083866 B = 0.009085 C = 0.008848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.786785 B = 3081.270195 C = 3163.819400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.142 4.142 3 H 0.101 0.899 4 C -0.166 4.166 5 C -0.049 4.049 6 H 0.114 0.886 7 C 0.243 3.757 8 N -0.403 5.403 9 N -0.508 5.508 10 H 0.439 0.561 11 C 0.411 3.589 12 C -0.428 4.428 13 H 0.102 0.898 14 C 0.073 3.927 15 N -0.836 5.836 16 Si 0.945 3.055 17 H -0.277 1.277 18 H -0.262 1.262 19 H -0.261 1.261 20 N -0.629 5.629 21 H 0.054 0.946 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 3.091 -2.115 3.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.162 4.162 3 H 0.119 0.881 4 C -0.204 4.204 5 C -0.070 4.070 6 H 0.132 0.868 7 C -0.040 4.040 8 N -0.239 5.239 9 N -0.234 5.234 10 H 0.293 0.707 11 C 0.157 3.843 12 C -0.469 4.469 13 H 0.120 0.880 14 C -0.144 4.144 15 N -0.470 5.470 16 Si 0.769 3.231 17 H -0.202 1.202 18 H -0.186 1.186 19 H -0.186 1.186 20 N -0.367 5.367 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.119 0.881 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.811 3.118 -2.727 4.221 hybrid contribution -0.698 -0.948 0.801 1.423 sum 0.113 2.170 -1.926 2.904 Atomic orbital electron populations 1.21292 0.92847 1.01645 1.01627 1.22317 0.95795 0.93605 1.04483 0.88067 1.23105 1.02031 1.01528 0.93767 1.19988 0.98507 0.96357 0.92151 0.86810 1.22348 0.95658 0.96108 0.89901 1.77517 1.18055 1.13421 1.14874 1.48664 1.36385 1.34372 1.03963 0.70700 1.20777 0.86764 0.88238 0.88538 1.18636 1.19600 1.16956 0.91750 0.88007 1.26048 0.93382 0.94723 1.00250 1.68745 1.21520 1.24899 1.31790 0.85745 0.78880 0.78695 0.79822 1.20233 1.18589 1.18585 1.70642 1.29019 1.23133 1.13883 0.92730 0.93307 0.91443 0.89157 0.88069 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 9.12 37.16 0.34 -1.74 15 2 C -0.14 -2.41 6.41 -90.62 -0.58 -2.99 15 3 H 0.10 1.43 8.14 -51.93 -0.42 1.01 15 4 C -0.17 -2.79 9.77 -26.73 -0.26 -3.06 15 5 C -0.05 -0.99 6.33 -91.78 -0.58 -1.57 15 6 H 0.11 2.13 8.14 -51.92 -0.42 1.70 15 7 C 0.24 6.21 6.79 -157.16 -1.07 5.14 15 8 N -0.40 -10.63 11.39 32.36 0.37 -10.26 15 9 N -0.51 -14.05 7.16 31.10 0.22 -13.82 15 10 H 0.44 11.79 6.38 -182.33 -1.16 10.63 15 11 C 0.41 11.76 7.67 -155.88 -1.20 10.57 15 12 C -0.43 -11.49 9.47 -38.02 -0.36 -11.85 15 13 H 0.10 2.63 7.85 -52.49 -0.41 2.21 15 14 C 0.07 1.76 5.50 -17.29 -0.10 1.67 15 15 N -0.84 -20.46 10.72 55.56 0.60 -19.86 15 16 Si 0.94 18.08 29.56 -169.99 -5.03 13.06 15 17 H -0.28 -5.12 7.11 56.52 0.40 -4.72 15 18 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 19 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 20 N -0.63 -17.76 11.24 -10.11 -0.11 -17.88 15 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.07 1.32 7.15 -51.93 -0.37 0.95 15 24 H 0.09 1.24 8.14 -51.93 -0.42 0.81 15 25 H 0.10 1.85 7.76 -51.93 -0.40 1.45 15 26 H 0.29 6.44 8.29 -40.82 -0.34 6.10 15 LS Contribution 230.61 15.07 3.48 3.48 Total: -1.00 -29.25 230.61 -7.88 -37.12 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -3.60 Total: 12.00 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -3.80 Total: -3.83 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 1.07 Total: -61.83 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.25 -7.88 -37.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083811096.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.599 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds