Wall clock time and date at job start Mon Mar 30 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 115.54918 * 2 1 4 4 C 1.53001 * 117.49599 * 214.29552 * 2 1 3 5 5 C 1.52993 * 59.99911 * 252.51292 * 4 2 1 6 6 H 1.09007 * 117.51447 * 252.51844 * 5 4 2 7 7 C 1.50697 * 117.50038 * 107.49517 * 5 4 2 8 8 N 1.31398 * 125.16000 * 351.39396 * 7 5 4 9 9 N 1.40454 * 107.18347 * 180.02562 * 8 7 5 10 10 H 0.96999 * 127.01886 * 179.97438 * 9 8 7 11 11 C 1.37023 * 105.96899 * 359.97438 * 9 8 7 12 12 C 1.40370 * 126.31885 * 180.02562 * 11 9 8 13 13 H 1.07997 * 119.99846 * 180.02562 * 12 11 9 14 14 C 1.40265 * 119.99798 * 0.02605 * 12 11 9 15 15 N 1.30647 * 120.00259 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99939 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47191 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.46768 * 299.99623 * 16 14 12 19 19 H 1.48498 * 109.47283 * 59.99874 * 16 14 12 20 20 N 1.32232 * 125.16195 * 171.70893 * 7 5 4 21 21 H 1.08997 * 109.46884 * 274.32600 * 1 2 3 22 22 H 1.09002 * 109.46765 * 34.32451 * 1 2 3 23 23 H 1.09002 * 109.47343 * 154.32566 * 1 2 3 24 24 H 1.08996 * 117.49985 * 145.01772 * 4 2 1 25 25 H 1.09005 * 117.49864 * 359.97438 * 4 2 1 26 26 H 0.97001 * 119.99897 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1212 -0.7647 5 6 2.2364 -1.1208 0.7652 6 1 3.1714 -0.8748 1.2687 7 6 1.3720 -2.1403 1.4613 8 7 0.4983 -2.9225 0.8688 9 7 -0.0910 -3.7168 1.8661 10 1 -0.7749 -4.3940 1.7452 11 6 0.4973 -3.3398 3.0448 12 6 0.2221 -3.8656 4.3169 13 1 0.7491 -3.4907 5.1817 14 6 -0.7374 -4.8781 4.4646 15 7 -1.3753 -5.3313 3.4184 16 14 -1.1042 -5.5774 6.1575 17 1 -2.1481 -6.6275 6.0437 18 1 0.1328 -6.1696 6.7270 19 1 -1.5884 -4.4917 7.0473 20 7 1.3735 -2.3792 2.7619 21 1 -0.3633 0.0775 1.0247 22 1 -0.3633 0.8487 -0.5795 23 1 -0.3634 -0.9262 -0.4452 24 1 3.1714 -0.8756 -1.2681 25 1 1.6111 -1.8591 -1.2675 26 1 -2.0385 -6.0317 3.5205 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083811096.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:16 Heat of formation + Delta-G solvation = 61.036581 kcal Electronic energy + Delta-G solvation = -11676.948926 eV Core-core repulsion = 9563.328888 eV Total energy + Delta-G solvation = -2113.620037 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.84186 -38.51927 -35.80452 -32.28459 -31.55589 -29.43064 -27.96886 -24.73843 -22.35769 -21.84995 -19.94490 -19.34843 -17.47988 -17.02105 -16.22215 -15.49633 -15.25173 -14.73178 -14.04818 -13.54237 -13.48072 -13.16927 -12.99210 -12.67178 -12.31655 -12.04114 -11.84510 -11.57941 -11.19892 -10.92906 -10.24615 -10.19622 -9.78416 -9.00627 -6.91588 1.16281 1.40339 1.56209 1.64964 2.15451 2.22585 2.75438 3.01171 3.34776 3.61556 3.88229 4.12523 4.36420 4.51764 4.71536 4.87673 4.94037 4.99165 5.05624 5.12944 5.31905 5.49275 5.62678 6.06187 6.22121 6.52673 6.57941 7.33476 8.03786 8.16752 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.083866 B = 0.009085 C = 0.008848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.786785 B = 3081.270195 C = 3163.819400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.124 4.124 3 H 0.142 0.858 4 C -0.143 4.143 5 C -0.090 4.090 6 H 0.126 0.874 7 C 0.241 3.759 8 N -0.419 5.419 9 N -0.523 5.523 10 H 0.436 0.564 11 C 0.382 3.618 12 C -0.460 4.460 13 H 0.102 0.898 14 C 0.037 3.963 15 N -0.851 5.851 16 Si 1.025 2.975 17 H -0.261 1.261 18 H -0.256 1.256 19 H -0.256 1.256 20 N -0.663 5.663 21 H 0.024 0.976 22 H 0.085 0.915 23 H 0.041 0.959 24 H 0.132 0.868 25 H 0.081 0.919 26 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 3.456 -1.935 4.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.144 4.144 3 H 0.160 0.840 4 C -0.181 4.181 5 C -0.110 4.110 6 H 0.144 0.856 7 C -0.042 4.042 8 N -0.254 5.254 9 N -0.250 5.250 10 H 0.290 0.710 11 C 0.129 3.871 12 C -0.501 4.501 13 H 0.120 0.880 14 C -0.178 4.178 15 N -0.483 5.483 16 Si 0.843 3.157 17 H -0.185 1.185 18 H -0.180 1.180 19 H -0.180 1.180 20 N -0.402 5.402 21 H 0.043 0.957 22 H 0.104 0.896 23 H 0.060 0.940 24 H 0.150 0.850 25 H 0.100 0.900 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.945 3.488 -2.592 4.447 hybrid contribution -0.780 -1.075 0.709 1.506 sum 0.164 2.413 -1.883 3.065 Atomic orbital electron populations 1.21275 0.93965 1.01951 1.00097 1.22520 0.94982 0.94787 1.02085 0.84010 1.23173 1.03319 1.00469 0.91114 1.20270 0.99025 0.97534 0.94211 0.85580 1.23327 0.95272 0.96175 0.89397 1.77468 1.19002 1.14096 1.14884 1.48662 1.37041 1.35092 1.04158 0.70992 1.21324 0.87365 0.88905 0.89476 1.19013 1.21254 1.18585 0.91281 0.87971 1.27134 0.91960 0.93874 1.04823 1.68750 1.21035 1.24606 1.33899 0.84594 0.79119 0.78139 0.73887 1.18488 1.17985 1.18001 1.70657 1.30018 1.24055 1.15454 0.95682 0.89584 0.93979 0.85027 0.90018 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 9.12 71.98 0.66 -3.36 15 2 C -0.12 -3.90 6.41 -10.79 -0.07 -3.97 15 3 H 0.14 3.36 8.14 -2.39 -0.02 3.34 15 4 C -0.14 -4.47 9.77 30.59 0.30 -4.17 15 5 C -0.09 -3.53 6.33 -11.54 -0.07 -3.61 15 6 H 0.13 4.57 8.14 -2.38 -0.02 4.55 15 7 C 0.24 12.61 6.79 138.74 0.94 13.55 15 8 N -0.42 -22.85 11.39 -51.55 -0.59 -23.43 15 9 N -0.52 -30.03 7.16 -55.51 -0.40 -30.43 15 10 H 0.44 24.32 6.38 -213.09 -1.36 22.96 15 11 C 0.38 22.63 7.67 133.83 1.03 23.65 15 12 C -0.46 -25.25 9.47 23.28 0.22 -25.03 15 13 H 0.10 5.40 7.85 -2.91 -0.02 5.38 15 14 C 0.04 1.80 5.50 85.36 0.47 2.27 15 15 N -0.85 -41.60 10.72 21.88 0.23 -41.36 15 16 Si 1.02 35.89 29.56 68.60 2.03 37.92 15 17 H -0.26 -8.41 7.11 99.48 0.71 -7.70 15 18 H -0.26 -8.72 7.11 99.48 0.71 -8.02 15 19 H -0.26 -8.73 7.11 99.48 0.71 -8.03 15 20 N -0.66 -38.68 11.24 -185.91 -2.09 -40.77 15 21 H 0.02 0.99 8.14 -2.39 -0.02 0.97 15 22 H 0.09 2.30 8.14 -2.39 -0.02 2.28 15 23 H 0.04 1.65 7.15 -2.39 -0.02 1.63 15 24 H 0.13 3.03 8.14 -2.39 -0.02 3.02 15 25 H 0.08 2.90 7.76 -2.38 -0.02 2.88 15 26 H 0.31 13.20 8.29 -92.71 -0.77 12.43 15 Total: -1.00 -65.55 230.61 2.50 -63.05 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.16 Total: 35.69 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 3.47 Total: -0.66 kcal Atomic # 7 Polarization: -133.16 SS G_CDS: -2.84 Total: -136.00 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Total: -65.55 2.50 -63.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083811096.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.090 kcal (2) G-P(sol) polarization free energy of solvation -65.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds