Wall clock time and date at job start Mon Mar 30 2020 02:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48507 * 109.46754 * 269.99797 * 3 2 1 5 5 H 1.48498 * 109.47278 * 29.99628 * 3 2 1 6 6 H 1.48498 * 109.47109 * 150.00058 * 3 2 1 7 7 C 1.37880 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99597 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00316 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46944 * 299.99153 * 9 7 2 11 11 C 1.52997 * 109.47103 * 179.97438 * 9 7 2 12 12 C 1.53007 * 117.49700 * 128.62025 * 11 9 7 13 13 C 1.53002 * 60.00136 * 252.50923 * 12 11 9 14 14 C 1.52997 * 109.47242 * 59.99321 * 9 7 2 15 15 F 1.39905 * 109.47157 * 180.02562 * 14 9 7 16 16 F 1.39900 * 109.47010 * 60.00500 * 14 9 7 17 17 F 1.39897 * 109.47422 * 300.00192 * 14 9 7 18 18 H 0.97003 * 119.99476 * 0.02562 * 1 2 3 19 19 H 1.08997 * 115.55351 * 274.32776 * 11 9 7 20 20 H 1.09000 * 117.49898 * 359.97438 * 12 11 9 21 21 H 1.09000 * 117.49979 * 145.02113 * 12 11 9 22 22 H 1.08997 * 117.50245 * 252.51671 * 13 12 11 23 23 H 1.08997 * 117.49832 * 107.48413 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8904 11 6 2.2452 -3.6621 0.0005 12 6 2.0603 -4.7495 1.0609 13 6 3.2200 -3.7581 1.1759 14 6 0.3717 -2.5804 -1.2489 15 9 -0.3283 -3.7918 -1.2486 16 9 1.1763 -2.5067 -2.3910 17 9 -0.5374 -1.5171 -1.2494 18 1 -0.4849 0.8401 -0.0004 19 1 2.6071 -3.9712 -0.9800 20 1 1.2307 -4.6362 1.7588 21 1 2.3005 -5.7744 0.7780 22 1 4.2231 -4.1307 0.9685 23 1 3.1531 -2.9928 1.9491 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084329943.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:31 Heat of formation + Delta-G solvation = -138.462598 kcal Electronic energy + Delta-G solvation = -12970.236912 eV Core-core repulsion = 10176.097788 eV Total energy + Delta-G solvation = -2794.139124 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.061 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.36001 -47.99157 -47.63542 -38.45202 -34.97035 -31.34267 -26.60094 -24.19193 -23.06635 -21.29704 -19.12911 -18.58353 -18.46263 -17.60702 -16.62769 -15.56480 -15.12580 -14.92119 -14.58531 -14.41902 -14.30792 -14.04870 -13.89063 -13.21936 -12.76624 -12.53063 -12.34124 -12.22345 -11.73238 -11.53667 -10.99975 -10.61819 -10.50093 -8.11982 -6.36245 1.43617 1.45066 1.55565 2.38324 2.56781 3.01147 3.11629 3.70335 3.92356 3.99658 4.24875 4.31021 4.52901 4.65567 4.87918 5.13822 5.18453 5.41221 5.50399 5.70694 6.01440 6.67824 7.31798 8.80364 Molecular weight = 194.06amu Principal moments of inertia in cm(-1) A = 0.036002 B = 0.018974 C = 0.014342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.552842 B = 1475.338643 C = 1951.906237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.008 3.992 3 Si 0.967 3.033 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.537 4.537 8 H 0.073 0.927 9 C 0.042 3.958 10 H 0.041 0.959 11 C -0.163 4.163 12 C -0.172 4.172 13 C -0.153 4.153 14 C 0.428 3.572 15 F -0.220 7.220 16 F -0.209 7.209 17 F -0.157 7.157 18 H 0.262 0.738 19 H 0.095 0.905 20 H 0.087 0.913 21 H 0.112 0.888 22 H 0.110 0.890 23 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.426 -4.763 0.742 5.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.573 4.573 8 H 0.091 0.909 9 C 0.022 3.978 10 H 0.059 0.941 11 C -0.181 4.181 12 C -0.208 4.208 13 C -0.190 4.190 14 C 0.373 3.627 15 F -0.202 7.202 16 F -0.191 7.191 17 F -0.138 7.138 18 H 0.072 0.928 19 H 0.113 0.887 20 H 0.105 0.895 21 H 0.130 0.870 22 H 0.128 0.872 23 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.231 -4.639 0.729 5.700 hybrid contribution -0.178 0.924 -0.456 1.046 sum 3.052 -3.715 0.272 4.816 Atomic orbital electron populations 1.70517 1.07127 1.27313 1.46565 1.25982 0.95875 1.03354 0.94318 0.85406 0.78873 0.78394 0.78163 1.20535 1.20712 1.18400 1.21140 0.93818 0.89293 1.53096 0.90880 1.19412 0.92872 0.95947 0.89545 0.94060 1.22093 1.02651 0.98006 0.95335 1.23098 1.00771 0.95497 1.01472 1.22828 0.94955 1.01541 0.99697 1.22855 0.80335 0.72080 0.87444 1.93012 1.81607 1.48478 1.97080 1.92970 1.74388 1.96186 1.55584 1.93371 1.69239 1.54793 1.96387 0.92785 0.88697 0.89469 0.86954 0.87209 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.89 9.50 21.45 0.20 -49.69 14 2 C 0.01 0.41 5.20 84.66 0.44 0.85 14 3 Si 0.97 42.57 29.54 68.60 2.03 44.60 14 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 14 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 14 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 14 7 C -0.54 -28.36 7.98 25.60 0.20 -28.15 14 8 H 0.07 3.76 7.63 -2.91 -0.02 3.73 14 9 C 0.04 2.07 2.07 -11.54 -0.02 2.05 14 10 H 0.04 2.19 7.90 -2.39 -0.02 2.17 14 11 C -0.16 -6.55 4.75 -10.79 -0.05 -6.60 14 12 C -0.17 -5.58 10.18 30.60 0.31 -5.27 14 13 C -0.15 -5.17 9.78 30.60 0.30 -4.87 14 14 C 0.43 21.84 2.67 71.98 0.19 22.03 14 15 F -0.22 -10.36 17.03 44.97 0.77 -9.59 14 16 F -0.21 -10.57 16.44 44.97 0.74 -9.83 14 17 F -0.16 -8.85 12.91 44.97 0.58 -8.27 14 18 H 0.26 14.21 8.31 -92.71 -0.77 13.44 14 19 H 0.09 3.78 7.70 -2.39 -0.02 3.77 14 20 H 0.09 2.88 8.05 -2.39 -0.02 2.86 14 21 H 0.11 3.00 8.14 -2.39 -0.02 2.98 14 22 H 0.11 3.08 8.14 -2.39 -0.02 3.06 14 23 H 0.09 3.11 8.14 -2.39 -0.02 3.09 14 Total: -1.00 -57.71 213.40 6.90 -50.81 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 1.21 Total: 1.93 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 1.37 Total: -19.96 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.20 Total: -49.69 kcal Atomic # 9 Polarization: -29.77 SS G_CDS: 2.09 Total: -27.69 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -57.71 6.90 -50.81 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329943.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.651 kcal (2) G-P(sol) polarization free energy of solvation -57.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds