Wall clock time and date at job start Mon Mar 30 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 12 12 C 1.53001 * 117.49873 * 248.62277 * 11 9 7 13 13 C 1.52998 * 60.00038 * 252.50881 * 12 11 9 14 14 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 15 15 F 1.39901 * 109.47523 * 60.00129 * 14 9 7 16 16 F 1.39899 * 109.47041 * 179.97438 * 14 9 7 17 17 F 1.39900 * 109.47321 * 299.99924 * 14 9 7 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 115.54794 * 34.32393 * 11 9 7 20 20 H 1.09005 * 117.49969 * 359.97438 * 12 11 9 21 21 H 1.08994 * 117.50225 * 145.01612 * 12 11 9 22 22 H 1.08999 * 117.49606 * 252.51137 * 13 12 11 23 23 H 1.09000 * 117.52102 * 107.47427 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 6 2.2451 -3.6622 -0.0104 12 6 2.3282 -4.5149 -1.2780 13 6 1.6726 -5.0810 -0.0169 14 6 0.3713 -2.5857 1.2434 15 9 -0.5378 -1.5224 1.2482 16 9 -0.3288 -3.7970 1.2377 17 9 1.1755 -2.5168 2.3861 18 1 -0.4850 0.8401 -0.0004 19 1 3.1679 -3.4942 0.5449 20 1 1.6743 -4.2477 -2.1082 21 1 3.3058 -4.9081 -1.5569 22 1 2.2189 -5.8466 0.5340 23 1 0.5876 -5.1858 -0.0169 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084329945.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:33 Heat of formation + Delta-G solvation = -121.539826 kcal Electronic energy + Delta-G solvation = -13030.011953 eV Core-core repulsion = 10236.606655 eV Total energy + Delta-G solvation = -2793.405298 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.061 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.33199 -45.99014 -45.52255 -36.83296 -33.06711 -29.42671 -24.46166 -22.36042 -21.72741 -19.60249 -17.18372 -16.54004 -16.40295 -15.58324 -14.71011 -14.17931 -13.42947 -12.91122 -12.66249 -12.40877 -12.24963 -11.95979 -11.78716 -11.26709 -10.87191 -10.82475 -10.67794 -10.60893 -10.07395 -9.59310 -9.30325 -8.95093 -8.51999 -6.08989 -4.27336 3.24521 3.32394 3.36824 4.28999 4.40027 4.75355 5.07036 5.40771 5.63308 5.70362 5.94903 6.13933 6.14870 6.22161 6.37839 6.69173 6.75180 6.90864 7.35586 7.75585 8.00297 8.71949 9.37618 10.83885 Molecular weight = 194.06amu Principal moments of inertia in cm(-1) A = 0.042849 B = 0.017348 C = 0.014237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.306611 B = 1613.613626 C = 1966.181674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.057 3.943 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.071 0.929 9 C 0.041 3.959 10 H 0.062 0.938 11 C -0.130 4.130 12 C -0.177 4.177 13 C -0.197 4.197 14 C 0.432 3.568 15 F -0.142 7.142 16 F -0.228 7.228 17 F -0.208 7.208 18 H 0.262 0.738 19 H 0.100 0.900 20 H 0.090 0.910 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 -4.727 -0.064 5.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.149 4.149 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.089 0.911 9 C 0.022 3.978 10 H 0.080 0.920 11 C -0.148 4.148 12 C -0.214 4.214 13 C -0.234 4.234 14 C 0.377 3.623 15 F -0.123 7.123 16 F -0.210 7.210 17 F -0.190 7.190 18 H 0.073 0.927 19 H 0.119 0.881 20 H 0.109 0.891 21 H 0.103 0.897 22 H 0.102 0.898 23 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.509 -4.589 -0.040 4.831 hybrid contribution 0.242 0.845 0.286 0.924 sum 1.751 -3.745 0.247 4.141 Atomic orbital electron populations 1.70400 1.05812 1.26617 1.45538 1.25169 0.95107 1.00061 0.94542 0.86300 0.80055 0.82640 0.77693 1.19471 1.20773 1.20769 1.20874 0.93544 0.88433 1.53492 0.91082 1.19477 0.92718 0.94677 0.90964 0.91983 1.22356 1.01213 0.90626 1.00616 1.22861 1.01504 1.04865 0.92149 1.23153 1.01173 0.97432 1.01652 1.22788 0.80287 0.72058 0.87129 1.93403 1.68671 1.53870 1.96315 1.92960 1.81859 1.49196 1.97000 1.92984 1.74433 1.96166 1.55404 0.92688 0.88145 0.89121 0.89728 0.89845 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.96 9.51 55.43 0.53 -23.43 14 2 C 0.06 1.56 5.20 -17.82 -0.09 1.47 14 3 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 14 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 14 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 14 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 14 7 C -0.53 -14.16 8.27 -34.44 -0.28 -14.44 14 8 H 0.07 1.87 7.73 -52.49 -0.41 1.47 14 9 C 0.04 1.03 2.12 -91.77 -0.19 0.83 14 10 H 0.06 1.62 7.90 -51.93 -0.41 1.21 14 11 C -0.13 -2.72 4.84 -90.62 -0.44 -3.16 14 12 C -0.18 -3.12 10.18 -26.73 -0.27 -3.39 14 13 C -0.20 -3.57 9.34 -26.73 -0.25 -3.82 14 14 C 0.43 11.01 2.67 37.16 0.10 11.11 14 15 F -0.14 -3.95 12.93 2.25 0.03 -3.92 14 16 F -0.23 -5.33 14.50 2.25 0.03 -5.30 14 17 F -0.21 -5.30 16.74 2.25 0.04 -5.26 14 18 H 0.26 7.04 8.31 -40.82 -0.34 6.70 14 19 H 0.10 2.09 8.09 -51.93 -0.42 1.67 14 20 H 0.09 1.59 8.05 -51.93 -0.42 1.17 14 21 H 0.08 1.30 8.14 -51.93 -0.42 0.88 14 22 H 0.08 1.34 8.14 -51.93 -0.42 0.91 14 23 H 0.10 1.88 6.36 -51.93 -0.33 1.55 14 LS Contribution 209.89 15.07 3.16 3.16 Total: -1.00 -27.90 209.89 -4.63 -32.53 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -1.96 Total: -2.33 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.43 Total: -11.41 kcal Atomic # 7 Polarization: -23.96 SS G_CDS: 0.53 Total: -23.43 kcal Atomic # 9 Polarization: -14.58 SS G_CDS: 0.10 Total: -14.48 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -27.90 -4.63 -32.53 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329945.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.007 kcal (2) G-P(sol) polarization free energy of solvation -27.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds