Wall clock time and date at job start Mon Mar 30 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 12 12 C 1.53001 * 117.49873 * 248.62277 * 11 9 7 13 13 C 1.52998 * 60.00038 * 252.50881 * 12 11 9 14 14 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 15 15 F 1.39901 * 109.47523 * 60.00129 * 14 9 7 16 16 F 1.39899 * 109.47041 * 179.97438 * 14 9 7 17 17 F 1.39900 * 109.47321 * 299.99924 * 14 9 7 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 115.54794 * 34.32393 * 11 9 7 20 20 H 1.09005 * 117.49969 * 359.97438 * 12 11 9 21 21 H 1.08994 * 117.50225 * 145.01612 * 12 11 9 22 22 H 1.08999 * 117.49606 * 252.51137 * 13 12 11 23 23 H 1.09000 * 117.52102 * 107.47427 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 6 2.2451 -3.6622 -0.0104 12 6 2.3282 -4.5149 -1.2780 13 6 1.6726 -5.0810 -0.0169 14 6 0.3713 -2.5857 1.2434 15 9 -0.5378 -1.5224 1.2482 16 9 -0.3288 -3.7970 1.2377 17 9 1.1755 -2.5168 2.3861 18 1 -0.4850 0.8401 -0.0004 19 1 3.1679 -3.4942 0.5449 20 1 1.6743 -4.2477 -2.1082 21 1 3.3058 -4.9081 -1.5569 22 1 2.2189 -5.8466 0.5340 23 1 0.5876 -5.1858 -0.0169 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084329945.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:33 Heat of formation + Delta-G solvation = -136.703097 kcal Electronic energy + Delta-G solvation = -13030.669482 eV Core-core repulsion = 10236.606655 eV Total energy + Delta-G solvation = -2794.062827 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.061 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.36047 -47.99065 -47.62690 -38.42738 -35.04954 -31.36280 -26.52085 -24.24097 -23.15022 -21.35764 -19.19643 -18.55839 -18.43619 -17.42914 -16.67264 -15.83731 -15.15277 -14.88743 -14.59253 -14.40274 -14.23708 -13.94003 -13.90032 -13.13955 -12.73682 -12.61705 -12.43718 -12.19098 -11.76653 -11.48825 -10.95405 -10.68690 -10.54006 -8.14205 -6.38927 1.42167 1.44323 1.56625 2.37819 2.54296 2.95495 3.13018 3.77282 3.92336 3.99074 4.16831 4.28364 4.43333 4.77920 4.85048 5.11251 5.15219 5.36192 5.50374 5.68302 6.00544 6.64627 7.29628 8.78779 Molecular weight = 194.06amu Principal moments of inertia in cm(-1) A = 0.042849 B = 0.017348 C = 0.014237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.306611 B = 1613.613626 C = 1966.181674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.008 3.992 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.283 1.283 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.041 3.959 10 H 0.041 0.959 11 C -0.161 4.161 12 C -0.156 4.156 13 C -0.184 4.184 14 C 0.429 3.571 15 F -0.159 7.159 16 F -0.216 7.216 17 F -0.209 7.209 18 H 0.263 0.737 19 H 0.100 0.900 20 H 0.088 0.912 21 H 0.115 0.885 22 H 0.110 0.890 23 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.796 -5.198 -0.343 5.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.209 1.209 7 C -0.580 4.580 8 H 0.089 0.911 9 C 0.021 3.979 10 H 0.059 0.941 11 C -0.179 4.179 12 C -0.193 4.193 13 C -0.221 4.221 14 C 0.374 3.626 15 F -0.140 7.140 16 F -0.198 7.198 17 F -0.191 7.191 18 H 0.073 0.927 19 H 0.118 0.882 20 H 0.106 0.894 21 H 0.133 0.867 22 H 0.128 0.872 23 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.602 -5.077 -0.322 5.714 hybrid contribution -0.124 0.936 0.381 1.018 sum 2.478 -4.141 0.058 4.826 Atomic orbital electron populations 1.70520 1.07136 1.27348 1.46402 1.25986 0.95912 1.03417 0.94157 0.85327 0.79149 0.78520 0.77666 1.18569 1.20023 1.20883 1.21191 0.93781 0.89582 1.53432 0.91050 1.19395 0.92993 0.95946 0.89527 0.94058 1.22221 1.00718 0.90814 1.04170 1.22976 1.02882 1.02368 0.91098 1.23204 1.00990 0.95856 1.02009 1.22858 0.80214 0.72023 0.87463 1.93365 1.69286 1.54942 1.96417 1.92973 1.81631 1.48240 1.96978 1.92971 1.74435 1.96198 1.55476 0.92706 0.88190 0.89366 0.86702 0.87179 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.97 9.51 21.45 0.20 -49.77 14 2 C 0.01 0.46 5.20 84.66 0.44 0.90 14 3 Si 0.97 42.72 29.54 68.60 2.03 44.74 14 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 14 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 14 6 H -0.28 -12.44 7.11 99.48 0.71 -11.74 14 7 C -0.54 -29.11 8.27 25.60 0.21 -28.89 14 8 H 0.07 3.72 7.73 -2.91 -0.02 3.70 14 9 C 0.04 2.04 2.12 -11.54 -0.02 2.02 14 10 H 0.04 2.20 7.90 -2.39 -0.02 2.18 14 11 C -0.16 -6.51 4.84 -10.79 -0.05 -6.57 14 12 C -0.16 -5.10 10.18 30.59 0.31 -4.79 14 13 C -0.18 -6.19 9.34 30.59 0.29 -5.90 14 14 C 0.43 21.86 2.67 71.98 0.19 22.05 14 15 F -0.16 -8.98 12.93 44.97 0.58 -8.40 14 16 F -0.22 -9.99 14.50 44.97 0.65 -9.33 14 17 F -0.21 -10.58 16.74 44.97 0.75 -9.83 14 18 H 0.26 14.21 8.31 -92.70 -0.77 13.44 14 19 H 0.10 4.03 8.09 -2.38 -0.02 4.01 14 20 H 0.09 2.92 8.05 -2.38 -0.02 2.90 14 21 H 0.11 3.06 8.14 -2.39 -0.02 3.04 14 22 H 0.11 3.12 8.14 -2.39 -0.02 3.10 14 23 H 0.09 3.23 6.36 -2.39 -0.02 3.22 14 Total: -1.00 -58.08 209.89 6.80 -51.29 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.22 Total: 2.48 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 1.36 Total: -21.18 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.20 Total: -49.77 kcal Atomic # 9 Polarization: -29.54 SS G_CDS: 1.99 Total: -27.56 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -58.08 6.80 -51.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329945.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.417 kcal (2) G-P(sol) polarization free energy of solvation -58.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds