Wall clock time and date at job start Mon Mar 30 2020 02:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30578 * 1 3 3 Si 1.86800 * 119.99900 * 2 1 4 4 H 1.48505 * 109.46881 * 90.00529 * 3 2 1 5 5 H 1.48500 * 109.47131 * 210.00094 * 3 2 1 6 6 H 1.48497 * 109.47497 * 330.00199 * 3 2 1 7 7 C 1.40389 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99977 * 17.30424 * 7 2 1 9 9 C 1.40611 * 120.00154 * 197.29713 * 7 2 1 10 10 C 1.40884 * 120.58860 * 28.77391 * 9 7 2 11 11 C 1.36387 * 120.01520 * 179.71206 * 10 9 7 12 12 C 1.39001 * 121.34053 * 0.57665 * 11 10 9 13 13 F 1.35096 * 119.37910 * 179.72666 * 12 11 10 14 14 C 1.38371 * 121.23892 * 359.70662 * 12 11 10 15 15 C 1.39648 * 119.85873 * 0.02562 * 14 12 11 16 16 C 1.46600 * 120.63445 * 179.97438 * 15 14 12 17 17 O 1.21346 * 120.00214 * 0.02562 * 16 15 14 18 18 H 0.97002 * 119.99970 * 175.43000 * 1 2 3 19 19 H 1.08002 * 119.99557 * 359.97438 * 10 9 7 20 20 H 1.07992 * 119.33127 * 180.25721 * 11 10 9 21 21 H 1.07996 * 120.07057 * 180.02562 * 14 12 11 22 22 H 1.08004 * 120.00410 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 2.4873 2.0463 1.4001 5 1 3.5373 1.4402 -0.7001 6 1 1.4372 2.6527 -0.7000 7 6 2.0077 -1.2158 -0.0005 8 1 1.5043 -2.1298 -0.2792 9 6 3.3661 -1.2436 0.3615 10 6 3.8876 -0.2938 1.2620 11 6 5.2058 -0.3352 1.6096 12 6 6.0625 -1.2949 1.0833 13 9 7.3625 -1.2959 1.4508 14 6 5.6088 -2.2496 0.1903 15 6 4.2670 -2.2577 -0.1965 16 6 3.7681 -3.2609 -1.1420 17 8 4.5233 -4.0953 -1.5959 18 1 -0.4850 -0.8374 -0.0669 19 1 3.2425 0.4646 1.6804 20 1 5.5930 0.3957 2.3040 21 1 6.2908 -2.9868 -0.2067 22 1 2.7285 -3.2575 -1.4345 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104485056.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:11 Heat of formation + Delta-G solvation = -77.586886 kcal Electronic energy + Delta-G solvation = -11440.949101 eV Core-core repulsion = 9067.846181 eV Total energy + Delta-G solvation = -2373.102920 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.048 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.73172 -38.41414 -36.84560 -34.11486 -30.40131 -30.32335 -25.32537 -23.66527 -21.33418 -19.82138 -18.63323 -16.80578 -15.62328 -14.94051 -14.58830 -14.45158 -14.17899 -13.63236 -13.43125 -13.08095 -12.91869 -11.87076 -11.46132 -11.32154 -10.95149 -10.41568 -10.24920 -9.93190 -9.40282 -8.72805 -8.18003 -8.01845 -7.59521 -5.00334 1.60377 2.31397 2.95499 3.10656 3.27493 3.45484 3.68858 4.17199 4.99984 5.24632 5.56352 5.68899 5.82529 6.19247 6.45366 6.50388 6.84645 7.01056 7.08396 7.23573 7.26955 7.53945 7.88449 8.04158 8.22271 8.50969 9.50607 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.033068 B = 0.016265 C = 0.011594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.526367 B = 1721.095086 C = 2414.380356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.041 3.959 3 Si 1.070 2.930 4 H -0.270 1.270 5 H -0.257 1.257 6 H -0.282 1.282 7 C -0.475 4.475 8 H 0.091 0.909 9 C 0.122 3.878 10 C -0.228 4.228 11 C -0.068 4.068 12 C -0.069 4.069 13 F -0.169 7.169 14 C -0.030 4.030 15 C -0.300 4.300 16 C 0.393 3.607 17 O -0.519 6.519 18 H 0.295 0.705 19 H 0.120 0.880 20 H 0.111 0.889 21 H 0.117 0.883 22 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 2.426 1.134 3.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.183 4.183 3 Si 0.894 3.106 4 H -0.197 1.197 5 H -0.181 1.181 6 H -0.209 1.209 7 C -0.501 4.501 8 H 0.109 0.891 9 C 0.118 3.882 10 C -0.247 4.247 11 C -0.088 4.088 12 C -0.089 4.089 13 F -0.148 7.148 14 C -0.049 4.049 15 C -0.302 4.302 16 C 0.260 3.740 17 O -0.400 6.400 18 H 0.107 0.893 19 H 0.137 0.863 20 H 0.129 0.871 21 H 0.135 0.865 22 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.090 3.578 0.951 4.252 hybrid contribution 0.139 -1.661 0.226 1.682 sum 2.228 1.918 1.177 3.167 Atomic orbital electron populations 1.70438 1.08220 1.33983 1.27034 1.27641 0.95575 1.04941 0.90173 0.83627 0.75927 0.72515 0.78482 1.19664 1.18104 1.20918 1.20917 0.94675 0.97279 1.37271 0.89131 1.18800 0.92236 0.89324 0.87873 1.20825 0.95136 1.04423 1.04307 1.20445 0.93745 0.96411 0.98164 1.17056 0.78627 1.04344 1.08851 1.91320 1.34969 1.96934 1.91610 1.20950 0.95502 0.95117 0.93376 1.21176 0.93114 1.06647 1.09286 1.23404 0.92891 0.80097 0.77594 1.90404 1.61480 1.36851 1.51280 0.89319 0.86294 0.87137 0.86482 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.99 13.64 55.57 0.76 -17.23 14 2 C 0.04 0.94 5.43 -17.28 -0.09 0.84 14 3 Si 1.07 21.14 24.90 -169.99 -4.23 16.90 14 4 H -0.27 -5.00 6.45 56.52 0.36 -4.63 14 5 H -0.26 -5.13 7.01 56.52 0.40 -4.73 14 6 H -0.28 -5.44 7.11 56.52 0.40 -5.03 14 7 C -0.48 -11.00 8.83 -37.88 -0.33 -11.33 14 8 H 0.09 2.08 6.98 -52.48 -0.37 1.72 14 9 C 0.12 2.82 5.31 -104.60 -0.56 2.26 14 10 C -0.23 -4.98 7.23 -39.25 -0.28 -5.26 14 11 C -0.07 -1.43 9.88 -39.97 -0.39 -1.82 14 12 C -0.07 -1.52 7.28 -39.25 -0.29 -1.81 14 13 F -0.17 -3.59 17.24 2.25 0.04 -3.55 14 14 C -0.03 -0.68 9.58 -39.01 -0.37 -1.06 14 15 C -0.30 -6.87 6.06 -102.59 -0.62 -7.50 14 16 C 0.39 8.57 11.04 34.10 0.38 8.95 14 17 O -0.52 -12.28 17.20 5.50 0.09 -12.18 14 18 H 0.29 6.55 8.72 -40.82 -0.36 6.19 14 19 H 0.12 2.46 4.39 -52.49 -0.23 2.23 14 20 H 0.11 1.98 8.06 -52.49 -0.42 1.55 14 21 H 0.12 2.55 7.67 -52.49 -0.40 2.15 14 22 H 0.09 1.69 6.76 -52.48 -0.35 1.34 14 LS Contribution 206.77 15.07 3.12 3.12 Total: -1.00 -25.15 206.77 -3.76 -28.91 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -0.97 Total: 0.76 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -2.57 Total: -16.73 kcal Atomic # 7 Polarization: -17.99 SS G_CDS: 0.76 Total: -17.23 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.04 Total: -3.55 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.23 Total: 16.90 kcal Total LS contribution 3.12 Total: 3.12 kcal Total: -25.15 -3.76 -28.91 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104485056.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.674 kcal (2) G-P(sol) polarization free energy of solvation -25.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds