Wall clock time and date at job start Mon Mar 30 2020 02:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30578 * 1 3 3 Si 1.86800 * 119.99900 * 2 1 4 4 H 1.48505 * 109.46881 * 90.00529 * 3 2 1 5 5 H 1.48500 * 109.47131 * 210.00094 * 3 2 1 6 6 H 1.48497 * 109.47497 * 330.00199 * 3 2 1 7 7 C 1.40389 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99977 * 17.30424 * 7 2 1 9 9 C 1.40611 * 120.00154 * 197.29713 * 7 2 1 10 10 C 1.40884 * 120.58860 * 28.77391 * 9 7 2 11 11 C 1.36387 * 120.01520 * 179.71206 * 10 9 7 12 12 C 1.39001 * 121.34053 * 0.57665 * 11 10 9 13 13 F 1.35096 * 119.37910 * 179.72666 * 12 11 10 14 14 C 1.38371 * 121.23892 * 359.70662 * 12 11 10 15 15 C 1.39648 * 119.85873 * 0.02562 * 14 12 11 16 16 C 1.46600 * 120.63445 * 179.97438 * 15 14 12 17 17 O 1.21346 * 120.00214 * 0.02562 * 16 15 14 18 18 H 0.97002 * 119.99970 * 175.43000 * 1 2 3 19 19 H 1.08002 * 119.99557 * 359.97438 * 10 9 7 20 20 H 1.07992 * 119.33127 * 180.25721 * 11 10 9 21 21 H 1.07996 * 120.07057 * 180.02562 * 14 12 11 22 22 H 1.08004 * 120.00410 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 2.4873 2.0463 1.4001 5 1 3.5373 1.4402 -0.7001 6 1 1.4372 2.6527 -0.7000 7 6 2.0077 -1.2158 -0.0005 8 1 1.5043 -2.1298 -0.2792 9 6 3.3661 -1.2436 0.3615 10 6 3.8876 -0.2938 1.2620 11 6 5.2058 -0.3352 1.6096 12 6 6.0625 -1.2949 1.0833 13 9 7.3625 -1.2959 1.4508 14 6 5.6088 -2.2496 0.1903 15 6 4.2670 -2.2577 -0.1965 16 6 3.7681 -3.2609 -1.1420 17 8 4.5233 -4.0953 -1.5959 18 1 -0.4850 -0.8374 -0.0669 19 1 3.2425 0.4646 1.6804 20 1 5.5930 0.3957 2.3040 21 1 6.2908 -2.9868 -0.2067 22 1 2.7285 -3.2575 -1.4345 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104485056.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:11 Heat of formation + Delta-G solvation = -91.530709 kcal Electronic energy + Delta-G solvation = -11441.553751 eV Core-core repulsion = 9067.846181 eV Total energy + Delta-G solvation = -2373.707570 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.048 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.43697 -40.17542 -38.60217 -35.85039 -32.13380 -32.05492 -27.07668 -25.38974 -23.07056 -21.54467 -20.36969 -18.51976 -17.36551 -16.63028 -16.28166 -16.14027 -15.87125 -15.35660 -15.16966 -14.88017 -14.55343 -13.57378 -13.16365 -13.01205 -12.57018 -12.11465 -11.88749 -11.59414 -11.03729 -10.48642 -9.90252 -9.77422 -9.35261 -6.78953 -0.12884 0.57176 1.39054 1.54624 1.65639 1.83133 2.10450 2.45591 3.24797 3.54541 3.87609 4.02099 4.17665 4.48317 4.74389 4.78764 5.13566 5.25382 5.36235 5.50209 5.53393 5.79631 6.11026 6.30790 6.47910 6.76268 7.75659 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.033068 B = 0.016265 C = 0.011594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.526367 B = 1721.095086 C = 2414.380356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.021 3.979 3 Si 1.090 2.910 4 H -0.245 1.245 5 H -0.261 1.261 6 H -0.276 1.276 7 C -0.490 4.490 8 H 0.082 0.918 9 C 0.112 3.888 10 C -0.234 4.234 11 C -0.063 4.063 12 C -0.073 4.073 13 F -0.165 7.165 14 C -0.042 4.042 15 C -0.318 4.318 16 C 0.397 3.603 17 O -0.540 6.540 18 H 0.293 0.707 19 H 0.134 0.866 20 H 0.146 0.854 21 H 0.118 0.882 22 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.461 3.551 1.814 4.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.201 4.201 3 Si 0.910 3.090 4 H -0.170 1.170 5 H -0.186 1.186 6 H -0.202 1.202 7 C -0.516 4.516 8 H 0.100 0.900 9 C 0.108 3.892 10 C -0.252 4.252 11 C -0.082 4.082 12 C -0.092 4.092 13 F -0.144 7.144 14 C -0.061 4.061 15 C -0.321 4.321 16 C 0.266 3.734 17 O -0.423 6.423 18 H 0.105 0.895 19 H 0.151 0.849 20 H 0.163 0.837 21 H 0.136 0.864 22 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.527 4.693 1.643 5.578 hybrid contribution 0.033 -2.049 0.024 2.050 sum 2.560 2.644 1.667 4.040 Atomic orbital electron populations 1.70480 1.08641 1.34008 1.28146 1.28451 0.95621 1.06663 0.89340 0.83402 0.75052 0.70609 0.79944 1.16997 1.18559 1.20247 1.20969 0.94984 0.97435 1.38216 0.90015 1.18979 0.92209 0.89829 0.88178 1.21040 0.95833 1.04392 1.03954 1.20760 0.93131 0.96383 0.97951 1.17238 0.79013 1.04377 1.08584 1.91331 1.34683 1.96910 1.91509 1.21076 0.95530 0.95618 0.93880 1.21375 0.93480 1.07237 1.09975 1.23639 0.93523 0.79335 0.76902 1.90392 1.62175 1.37644 1.52081 0.89515 0.84894 0.83650 0.86418 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.01 13.64 21.90 0.30 -35.71 14 2 C 0.02 0.91 5.43 85.40 0.46 1.37 14 3 Si 1.09 40.07 24.90 68.60 1.71 41.78 14 4 H -0.24 -8.02 6.45 99.48 0.64 -7.38 14 5 H -0.26 -9.76 7.01 99.48 0.70 -9.07 14 6 H -0.28 -9.85 7.11 99.48 0.71 -9.15 14 7 C -0.49 -22.27 8.83 23.37 0.21 -22.07 14 8 H 0.08 3.76 6.98 -2.91 -0.02 3.74 14 9 C 0.11 5.02 5.31 -19.85 -0.11 4.92 14 10 C -0.23 -9.57 7.23 22.49 0.16 -9.41 14 11 C -0.06 -2.44 9.88 22.02 0.22 -2.22 14 12 C -0.07 -3.03 7.28 22.48 0.16 -2.86 14 13 F -0.16 -6.61 17.24 44.97 0.78 -5.84 14 14 C -0.04 -1.84 9.58 22.64 0.22 -1.62 14 15 C -0.32 -14.32 6.06 -18.55 -0.11 -14.43 14 16 C 0.40 17.14 11.04 70.00 0.77 17.91 14 17 O -0.54 -25.37 17.20 -3.23 -0.06 -25.43 14 18 H 0.29 12.95 8.72 -92.71 -0.81 12.14 14 19 H 0.13 5.03 4.39 -2.91 -0.01 5.02 14 20 H 0.15 4.53 8.06 -2.91 -0.02 4.51 14 21 H 0.12 5.06 7.67 -2.91 -0.02 5.03 14 22 H 0.11 4.14 6.76 -2.91 -0.02 4.12 14 Total: -1.00 -50.49 206.77 5.85 -44.64 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.14 Total: 8.97 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 1.99 Total: -28.40 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.30 Total: -35.71 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.06 Total: -25.43 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.78 Total: -5.84 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 1.71 Total: 41.78 kcal Total: -50.49 5.85 -44.64 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104485056.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.894 kcal (2) G-P(sol) polarization free energy of solvation -50.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds