Wall clock time and date at job start Mon Mar 30 2020 02:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86793 * 119.99938 * 2 1 4 4 H 1.48504 * 109.46967 * 274.98003 * 3 2 1 5 5 H 1.48491 * 109.47420 * 34.98146 * 3 2 1 6 6 H 1.48506 * 109.47258 * 154.98618 * 3 2 1 7 7 C 1.40114 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99837 * 185.82492 * 7 2 1 9 9 C 1.46233 * 120.00178 * 6.10304 * 7 2 1 10 10 O 1.21707 * 119.99588 * 353.57711 * 9 7 2 11 11 N 1.34776 * 120.00033 * 173.58244 * 9 7 2 12 12 C 1.38688 * 119.99539 * 180.02562 * 11 9 7 13 13 N 1.32705 * 119.64422 * 179.73028 * 12 11 9 14 14 C 1.32362 * 119.46253 * 179.72622 * 13 12 11 15 15 C 1.38786 * 118.82792 * 0.53157 * 14 13 12 16 16 N 1.32202 * 119.27260 * 359.73297 * 15 14 13 17 17 N 1.28746 * 120.47687 * 359.97438 * 16 15 14 18 18 H 0.96995 * 120.00010 * 0.02562 * 1 2 3 19 19 H 0.96993 * 120.00564 * 359.97438 * 11 9 7 20 20 H 1.08012 * 120.58992 * 180.26213 * 14 13 12 21 21 H 1.07993 * 120.36488 * 179.70309 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3826 2.1071 -1.3948 5 1 1.4945 2.6199 0.8026 6 1 3.5867 1.4120 0.5920 7 6 2.0070 -1.2134 0.0005 8 1 3.0828 -1.2158 0.0955 9 6 1.2821 -2.4763 -0.1335 10 8 0.0650 -2.4829 -0.1280 11 7 1.9617 -3.6330 -0.2631 12 6 1.2740 -4.8306 -0.3908 13 7 1.9502 -5.9648 -0.5234 14 6 1.2903 -7.1063 -0.6395 15 6 -0.0973 -7.0811 -0.6302 16 7 -0.7219 -5.9232 -0.5007 17 7 -0.0526 -4.8296 -0.3840 18 1 -0.4850 0.8400 -0.0004 19 1 2.9316 -3.6278 -0.2678 20 1 1.8223 -8.0405 -0.7441 21 1 -0.6606 -7.9973 -0.7281 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160017204.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:15 Heat of formation + Delta-G solvation = 51.914657 kcal Electronic energy + Delta-G solvation = -11463.820451 eV Core-core repulsion = 9148.545852 eV Total energy + Delta-G solvation = -2315.274599 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.054 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.12803 -37.72372 -34.62249 -33.64597 -32.52770 -30.77017 -26.74476 -25.24922 -23.96651 -20.64208 -18.62982 -17.06528 -16.76071 -15.89811 -15.40190 -15.26310 -14.37398 -13.91036 -12.83552 -12.65605 -11.60102 -11.41040 -11.30887 -11.12523 -11.00822 -10.67037 -10.37757 -10.25431 -9.01206 -8.70043 -7.97863 -7.78876 -6.42047 -4.90082 1.15611 1.39034 3.05226 3.11135 3.15858 3.49954 4.02122 4.04576 4.32302 4.48129 4.70739 5.06381 5.35140 5.56315 5.70519 6.25458 7.10090 7.22455 7.36583 7.73290 8.02666 8.75031 8.85336 9.33167 10.28071 10.48368 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.098484 B = 0.009299 C = 0.008530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.241163 B = 3010.360239 C = 3281.802523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.084 3.916 3 Si 0.919 3.081 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.076 0.924 9 C 0.525 3.475 10 O -0.504 6.504 11 N -0.635 5.635 12 C 0.484 3.516 13 N -0.524 5.524 14 C 0.150 3.850 15 C -0.094 4.094 16 N -0.167 5.167 17 N -0.251 5.251 18 H 0.275 0.725 19 H 0.406 0.594 20 H 0.177 0.823 21 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 -8.396 -1.060 9.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.138 4.138 3 Si 0.742 3.258 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.095 0.905 9 C 0.330 3.670 10 O -0.378 6.378 11 N -0.284 5.284 12 C 0.127 3.873 13 N -0.252 5.252 14 C -0.028 4.028 15 C -0.264 4.264 16 N -0.020 5.020 17 N -0.110 5.110 18 H 0.086 0.914 19 H 0.242 0.758 20 H 0.194 0.806 21 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.276 -7.075 -0.919 7.851 hybrid contribution 1.476 -0.264 -0.137 1.505 sum 4.752 -7.340 -1.056 8.807 Atomic orbital electron populations 1.69989 1.07193 1.28189 1.32773 1.25760 0.94783 1.00620 0.92625 0.86168 0.80101 0.80585 0.78902 1.19558 1.20169 1.18649 1.20781 0.94386 0.88347 1.53229 0.90540 1.18803 0.88051 0.81274 0.78864 1.90792 1.12813 1.83575 1.50640 1.44650 1.10537 1.02783 1.70399 1.21741 0.88923 0.87542 0.89043 1.68536 1.40660 0.98613 1.17391 1.23769 0.92824 0.96546 0.89691 1.24666 0.95190 1.00276 1.06259 1.73832 1.31326 0.95343 1.01508 1.74780 1.04274 1.16740 1.15215 0.91414 0.75795 0.80634 0.80936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.86 11.85 55.55 0.66 -21.20 14 2 C 0.08 2.25 5.50 -17.35 -0.10 2.15 14 3 Si 0.92 19.25 29.56 -169.99 -5.03 14.22 14 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 14 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 14 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 14 7 C -0.53 -14.37 9.53 -35.67 -0.34 -14.71 14 8 H 0.08 1.85 7.85 -52.49 -0.41 1.43 14 9 C 0.53 14.85 7.69 -13.05 -0.10 14.75 14 10 O -0.50 -16.27 13.26 5.18 0.07 -16.20 14 11 N -0.64 -14.91 5.39 -14.32 -0.08 -14.99 14 12 C 0.48 11.03 8.45 -321.90 -2.72 8.31 14 13 N -0.52 -9.65 10.56 -13.71 -0.14 -9.80 14 14 C 0.15 2.11 11.32 -17.12 -0.19 1.92 14 15 C -0.09 -1.41 11.35 -17.19 -0.20 -1.61 14 16 N -0.17 -3.51 11.63 30.63 0.36 -3.16 14 17 N -0.25 -6.28 9.05 29.88 0.27 -6.01 14 18 H 0.27 7.18 8.29 -40.82 -0.34 6.84 14 19 H 0.41 8.05 8.80 -40.82 -0.36 7.69 14 20 H 0.18 1.48 8.06 -52.48 -0.42 1.06 14 21 H 0.17 1.73 8.06 -52.49 -0.42 1.31 14 LS Contribution 207.52 15.07 3.13 3.13 Total: -1.00 -35.03 207.52 -5.16 -40.19 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -0.75 Total: 3.00 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: -3.64 Total: 10.81 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 1.06 Total: -55.15 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.07 Total: -16.20 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -35.03 -5.16 -40.19 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160017204.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.105 kcal (2) G-P(sol) polarization free energy of solvation -35.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds