Wall clock time and date at job start Mon Mar 30 2020 02:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30596 * 1 3 3 Si 1.86799 * 120.00009 * 2 1 4 4 H 1.48505 * 109.47102 * 240.00148 * 3 2 1 5 5 H 1.48506 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47119 * 120.00219 * 3 2 1 7 7 C 1.40309 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00409 * 197.88656 * 7 2 1 9 9 C 1.41030 * 119.99990 * 17.88246 * 7 2 1 10 10 C 1.41026 * 120.05595 * 204.71888 * 9 7 2 11 11 C 1.36124 * 119.99413 * 179.97438 * 10 9 7 12 12 C 1.40397 * 120.10125 * 0.02562 * 11 10 9 13 13 C 1.46709 * 119.94404 * 180.27523 * 12 11 10 14 14 O 1.21329 * 120.00364 * 359.72647 * 13 12 11 15 15 C 1.40535 * 120.11001 * 0.02562 * 12 11 10 16 16 F 1.35100 * 119.99587 * 179.97438 * 15 12 11 17 17 C 1.36571 * 120.00789 * 359.97438 * 15 12 11 18 18 H 0.97006 * 119.99834 * 359.97438 * 1 2 3 19 19 H 1.08001 * 120.00317 * 0.03845 * 10 9 7 20 20 H 1.07996 * 119.95355 * 180.02562 * 11 10 9 21 21 H 1.08003 * 120.00030 * 179.72555 * 13 12 11 22 22 H 1.07994 * 120.05193 * 180.02562 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0937 1.6964 -1.2126 5 1 1.2749 2.7465 0.0006 6 1 3.0937 1.6964 1.2124 7 6 2.0075 -1.2151 -0.0005 8 1 3.0484 -1.2379 0.2867 9 6 1.3535 -2.4068 -0.3761 10 6 1.8273 -3.6501 0.0915 11 6 1.1948 -4.7995 -0.2714 12 6 0.0710 -4.7497 -1.1114 13 6 -0.6117 -5.9902 -1.4955 14 8 -0.2022 -7.0583 -1.0912 15 6 -0.4042 -3.5132 -1.5808 16 9 -1.4855 -3.4681 -2.3895 17 6 0.2270 -2.3573 -1.2195 18 1 -0.4850 0.8401 0.0004 19 1 2.6913 -3.6901 0.7383 20 1 1.5579 -5.7512 0.0874 21 1 -1.4790 -5.9526 -2.1381 22 1 -0.1378 -1.4067 -1.5795 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165644937.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:46 Heat of formation + Delta-G solvation = -91.362436 kcal Electronic energy + Delta-G solvation = -11349.821152 eV Core-core repulsion = 8976.120879 eV Total energy + Delta-G solvation = -2373.700273 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.048 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.71556 -40.06236 -38.71468 -35.76696 -32.08032 -31.15119 -28.30942 -24.65634 -23.00491 -21.74674 -19.71861 -17.92264 -17.66949 -16.86204 -16.60096 -16.39540 -15.58327 -14.97159 -14.83156 -14.59535 -14.14715 -13.71184 -13.29851 -12.86737 -12.64034 -12.28179 -11.99475 -11.73047 -11.19611 -10.47475 -9.66655 -9.50459 -8.93027 -6.66951 0.05386 0.93234 1.34077 1.40450 1.53276 1.81102 2.11687 2.58623 3.45937 3.59987 3.70253 4.26152 4.53779 4.74890 4.89345 4.91375 5.10645 5.47710 5.53998 5.76005 5.79382 6.06884 6.36457 6.57795 6.67720 6.75333 7.99902 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.065021 B = 0.010528 C = 0.009291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.525297 B = 2658.988476 C = 3012.808620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.033 3.967 3 Si 0.995 3.005 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.252 1.252 7 C -0.443 4.443 8 H 0.104 0.896 9 C 0.118 3.882 10 C -0.252 4.252 11 C -0.009 4.009 12 C -0.384 4.384 13 C 0.393 3.607 14 O -0.538 6.538 15 C 0.159 3.841 16 F -0.152 7.152 17 C -0.243 4.243 18 H 0.303 0.697 19 H 0.120 0.880 20 H 0.120 0.880 21 H 0.113 0.887 22 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.268 3.265 -1.131 3.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.188 4.188 3 Si 0.814 3.186 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.175 1.175 7 C -0.468 4.468 8 H 0.122 0.878 9 C 0.114 3.886 10 C -0.271 4.271 11 C -0.028 4.028 12 C -0.387 4.387 13 C 0.262 3.738 14 O -0.420 6.420 15 C 0.140 3.860 16 F -0.131 7.131 17 C -0.263 4.263 18 H 0.115 0.885 19 H 0.138 0.862 20 H 0.138 0.862 21 H 0.129 0.871 22 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.188 2.869 -0.942 3.245 hybrid contribution -0.171 0.741 -0.121 0.770 sum 1.017 3.609 -1.063 3.898 Atomic orbital electron populations 1.69736 1.09714 1.32539 1.28692 1.27170 0.95549 1.05538 0.90588 0.85030 0.78779 0.74099 0.80723 1.17945 1.18911 1.17547 1.20349 0.99270 0.91612 1.35582 0.87847 1.17907 0.89858 0.93690 0.87152 1.20976 1.05584 0.92190 1.08385 1.20603 0.92078 0.97842 0.92241 1.20111 1.07550 0.93604 1.17476 1.23619 0.85895 0.85965 0.78330 1.90387 1.66436 1.33277 1.51920 1.17591 0.83792 0.94425 0.90227 1.91353 1.53084 1.97495 1.71144 1.20968 1.02834 0.96228 1.06276 0.88546 0.86203 0.86229 0.87129 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.14 10.96 21.89 0.24 -35.90 14 2 C 0.03 1.44 5.13 85.38 0.44 1.88 14 3 Si 1.00 32.09 29.60 68.60 2.03 34.12 14 4 H -0.26 -8.12 7.11 99.48 0.71 -7.41 14 5 H -0.27 -8.13 7.11 99.48 0.71 -7.42 14 6 H -0.25 -7.78 7.11 99.48 0.71 -7.07 14 7 C -0.44 -20.71 9.04 23.46 0.21 -20.49 14 8 H 0.10 4.45 7.91 -2.91 -0.02 4.43 14 9 C 0.12 5.84 5.57 -21.28 -0.12 5.72 14 10 C -0.25 -11.63 9.72 22.46 0.22 -11.41 14 11 C -0.01 -0.41 9.52 22.30 0.21 -0.20 14 12 C -0.38 -17.53 5.89 -19.98 -0.12 -17.65 14 13 C 0.39 16.16 11.23 70.03 0.79 16.95 14 14 O -0.54 -24.39 17.14 -3.18 -0.05 -24.45 14 15 C 0.16 7.51 7.24 22.44 0.16 7.67 14 16 F -0.15 -6.58 16.58 44.97 0.75 -5.83 14 17 C -0.24 -12.16 8.60 22.51 0.19 -11.97 14 18 H 0.30 12.36 8.29 -92.70 -0.77 11.60 14 19 H 0.12 4.98 8.06 -2.91 -0.02 4.96 14 20 H 0.12 5.06 7.63 -2.91 -0.02 5.04 14 21 H 0.11 3.79 7.72 -2.91 -0.02 3.77 14 22 H 0.12 6.16 6.16 -2.91 -0.02 6.15 14 Total: -1.00 -53.71 213.31 6.19 -47.52 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.24 Total: 14.03 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 1.99 Total: -29.50 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.24 Total: -35.90 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.75 Total: -5.83 kcal Atomic # 14 Polarization: 32.09 SS G_CDS: 2.03 Total: 34.12 kcal Total: -53.71 6.19 -47.52 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165644937.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.840 kcal (2) G-P(sol) polarization free energy of solvation -53.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds