Wall clock time and date at job start Mon Mar 30 2020 02:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47422 * 22.15161 * 3 2 1 5 5 C 1.53007 * 109.47322 * 142.15276 * 3 2 1 6 6 N 1.46897 * 109.47052 * 262.14934 * 3 2 1 7 7 C 1.46904 * 110.99991 * 153.51730 * 6 3 2 8 8 C 1.53001 * 109.46999 * 181.15807 * 7 6 3 9 9 C 1.50699 * 115.54947 * 295.05492 * 8 7 6 10 10 H 1.08002 * 119.99854 * 90.86048 * 9 8 7 11 11 C 1.37875 * 120.00342 * 270.85100 * 9 8 7 12 12 N 1.31516 * 119.99858 * 182.56035 * 11 9 8 13 13 Si 1.86799 * 119.99969 * 2.56479 * 11 9 8 14 14 H 1.48500 * 109.47052 * 269.04780 * 13 11 9 15 15 H 1.48502 * 109.46940 * 29.04769 * 13 11 9 16 16 H 1.48500 * 109.46980 * 149.04981 * 13 11 9 17 17 C 1.53002 * 117.50000 * 80.73154 * 8 7 6 18 18 C 1.53005 * 117.49579 * 149.39149 * 8 7 6 19 19 H 4.18734 * 15.03992 * 0.02562 * 4 2 1 20 20 H 1.09005 * 109.46646 * 64.85410 * 5 3 2 21 21 H 1.08998 * 109.47254 * 184.86061 * 5 3 2 22 22 H 1.08996 * 109.46541 * 304.86010 * 5 3 2 23 23 H 1.00902 * 111.00172 * 29.56805 * 6 3 2 24 24 H 1.08998 * 109.47165 * 61.16111 * 7 6 3 25 25 H 1.09000 * 109.47307 * 301.16103 * 7 6 3 26 26 H 0.97004 * 119.99810 * 180.02562 * 12 11 9 27 27 H 1.09000 * 117.49464 * 215.00310 * 17 8 7 28 28 H 1.08998 * 117.49503 * 0.02562 * 17 8 7 29 29 H 1.08993 * 117.50257 * 359.97069 * 18 8 7 30 30 H 1.08996 * 117.49721 * 144.97879 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.9509 -0.3875 5 6 3.1556 1.1400 -0.8851 6 7 3.1356 0.1901 1.3720 7 6 4.4687 -0.4033 1.5419 8 6 4.9317 -0.2117 2.9875 9 6 5.1532 1.2162 3.4153 10 1 4.3451 1.7784 3.8595 11 6 6.3875 1.8049 3.2397 12 7 6.5954 3.0340 3.6587 13 14 7.7646 0.8566 2.4066 14 1 8.5559 0.1300 3.4318 15 1 7.1849 -0.1171 1.4469 16 1 8.6476 1.8032 1.6790 17 6 4.3957 -1.1884 4.0363 18 6 5.8544 -1.2782 3.5809 19 1 -1.0499 -0.0008 -0.0008 20 1 2.8645 2.0961 -0.4499 21 1 4.2421 1.0880 -0.9546 22 1 2.7229 1.0474 -1.8812 23 1 2.4838 -0.1868 2.0438 24 1 5.1722 0.0847 0.8674 25 1 4.4244 -1.4680 1.3125 26 1 7.4637 3.4484 3.5349 27 1 4.2033 -0.7980 5.0356 28 1 3.7136 -1.9676 3.6962 29 1 6.1313 -2.1165 2.9416 30 1 6.6218 -0.9470 4.2805 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166747694.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:55 Heat of formation + Delta-G solvation = 80.597088 kcal Electronic energy + Delta-G solvation = -11903.749358 eV Core-core repulsion = 9894.517871 eV Total energy + Delta-G solvation = -2009.231487 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.72453 -35.87322 -32.14559 -31.90615 -29.42718 -26.09036 -24.67654 -22.18250 -21.52531 -19.05570 -17.86946 -16.27483 -15.44155 -14.83225 -14.61271 -13.82645 -13.62374 -12.81419 -12.45853 -12.22902 -11.99643 -11.55653 -11.20291 -11.06481 -10.54241 -10.47608 -10.30488 -10.15739 -9.94531 -9.50911 -8.99083 -8.46650 -8.44318 -7.74594 -5.98182 -3.97529 2.91806 2.99806 3.34454 3.43666 3.47190 4.43874 4.51211 4.71407 5.10129 5.29097 5.46533 5.61740 5.85919 5.91427 6.05057 6.05515 6.16126 6.20420 6.30645 6.46264 6.51948 6.61418 6.75646 7.09440 7.21033 7.66276 7.78334 7.82369 8.01407 8.64864 9.07919 9.65114 11.14517 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.038212 B = 0.011531 C = 0.010491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.579210 B = 2427.591996 C = 2668.215126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C 0.187 3.813 4 H 0.056 0.944 5 C -0.134 4.134 6 N -0.657 5.657 7 C 0.098 3.902 8 C 0.007 3.993 9 C -0.462 4.462 10 H 0.079 0.921 11 C 0.073 3.927 12 N -0.903 5.903 13 Si 0.880 3.120 14 H -0.282 1.282 15 H -0.262 1.262 16 H -0.296 1.296 17 C -0.185 4.185 18 C -0.203 4.203 19 H 0.216 0.784 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.340 0.660 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.262 0.738 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.139 -7.657 -6.794 11.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.173 4.173 3 C 0.078 3.922 4 H 0.074 0.926 5 C -0.192 4.192 6 N -0.288 5.288 7 C -0.031 4.031 8 C 0.006 3.994 9 C -0.500 4.500 10 H 0.097 0.903 11 C -0.128 4.128 12 N -0.541 5.541 13 Si 0.709 3.291 14 H -0.208 1.208 15 H -0.186 1.186 16 H -0.223 1.223 17 C -0.222 4.222 18 C -0.240 4.240 19 H 0.233 0.767 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.159 0.841 24 H 0.090 0.910 25 H 0.022 0.978 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.728 -6.865 -6.908 11.299 hybrid contribution 0.461 -1.412 -0.380 1.533 sum -5.266 -8.278 -7.288 12.221 Atomic orbital electron populations 1.24815 0.95774 1.02078 1.00426 1.23301 0.94422 0.99346 1.00274 1.18606 0.83093 0.98140 0.92384 0.92616 1.21748 1.01316 0.98852 0.97256 1.60474 1.04063 1.62964 1.01262 1.21838 0.89555 0.93246 0.98435 1.19436 0.98071 0.92695 0.89239 1.20154 0.97623 0.92920 1.39290 0.90329 1.24952 0.98280 0.94680 0.94908 1.69899 1.23540 1.13536 1.47123 0.86861 0.82222 0.79726 0.80311 1.20796 1.18630 1.22314 1.22825 0.95306 1.02993 1.01072 1.22985 0.93814 1.02163 1.05084 0.76742 0.91157 0.91776 0.93048 0.84144 0.91026 0.97794 0.92826 0.89472 0.91455 0.91180 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.81 19.25 29.55 0.57 -2.25 16 2 C -0.17 -2.68 12.52 -37.12 -0.46 -3.14 16 3 C 0.19 3.06 3.07 -70.50 -0.22 2.84 16 4 H 0.06 0.86 7.76 -51.93 -0.40 0.45 16 5 C -0.13 -2.10 9.37 37.16 0.35 -1.75 16 6 N -0.66 -12.71 6.21 -109.71 -0.68 -13.39 16 7 C 0.10 2.02 4.98 -3.82 -0.02 2.00 16 8 C 0.01 0.16 0.95 -155.66 -0.15 0.01 16 9 C -0.46 -12.90 9.33 -34.44 -0.32 -13.22 16 10 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 11 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 13 Si 0.88 21.82 24.78 -169.99 -4.21 17.61 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.26 -6.10 5.86 56.52 0.33 -5.77 16 16 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 17 C -0.18 -3.75 9.96 -26.69 -0.27 -4.02 16 18 C -0.20 -4.33 7.55 -26.69 -0.20 -4.53 16 19 H 0.22 1.96 7.80 -54.09 -0.42 1.54 16 20 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 21 H 0.06 1.02 7.69 -51.93 -0.40 0.62 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.34 6.38 8.30 -39.29 -0.33 6.05 16 24 H 0.07 1.57 6.37 -51.93 -0.33 1.24 16 25 H 0.00 0.08 7.98 -51.93 -0.41 -0.34 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.09 2.00 7.11 -51.93 -0.37 1.63 16 LS Contribution 257.55 15.07 3.88 3.88 Total: -1.00 -30.16 257.55 -5.46 -35.62 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.41 Total: 5.32 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -0.82 Total: -22.05 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.09 Total: -40.38 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.21 Total: 17.61 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.16 -5.46 -35.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166747694.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.215 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds