Wall clock time and date at job start Mon Mar 30 2020 02:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34850 * 125.89320 * 2 1 4 4 C 1.40884 * 107.42192 * 180.02562 * 3 2 1 5 5 C 1.34854 * 107.41513 * 359.97438 * 4 3 2 6 6 N 1.36338 * 125.89246 * 180.02562 * 2 1 3 7 7 C 1.46505 * 125.63413 * 359.97438 * 6 2 1 8 8 C 1.52991 * 109.47231 * 85.02476 * 7 6 2 9 9 C 1.53007 * 109.47432 * 179.97438 * 8 7 6 10 10 C 1.50692 * 109.47500 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99973 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00273 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99735 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00061 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47155 * 90.00132 * 14 12 10 16 16 H 1.48501 * 109.47327 * 209.99867 * 14 12 10 17 17 H 1.48499 * 109.47647 * 330.00248 * 14 12 10 18 18 H 1.09001 * 109.47653 * 89.97193 * 1 2 3 19 19 H 1.09000 * 109.47595 * 209.97268 * 1 2 3 20 20 H 1.09007 * 109.47117 * 329.97745 * 1 2 3 21 21 H 1.08004 * 126.28882 * 359.97438 * 3 2 1 22 22 H 1.07998 * 126.29455 * 179.97438 * 4 3 2 23 23 H 1.08006 * 125.89018 * 179.74251 * 5 4 3 24 24 H 1.09003 * 109.47057 * 205.02572 * 7 6 2 25 25 H 1.09002 * 109.47110 * 325.02167 * 7 6 2 26 26 H 1.09000 * 109.47668 * 300.00589 * 8 7 6 27 27 H 1.09001 * 109.47512 * 60.00342 * 8 7 6 28 28 H 1.09001 * 109.46523 * 300.00774 * 9 8 7 29 29 H 1.09001 * 109.46421 * 59.99762 * 9 8 7 30 30 H 0.96991 * 120.00063 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2975 1.0924 0.0000 4 6 3.6338 0.6461 -0.0006 5 6 3.6089 -0.7022 -0.0004 6 7 2.3062 -1.1045 -0.0005 7 6 1.8420 -2.4941 -0.0006 8 6 1.5613 -2.9379 -1.4375 9 6 1.0770 -4.3893 -1.4377 10 6 0.8011 -4.8267 -2.8531 11 1 0.9560 -4.1384 -3.6709 12 6 0.3508 -6.1055 -3.1042 13 7 0.1617 -6.9434 -2.1084 14 14 0.0081 -6.6473 -4.8587 15 1 1.2402 -7.2328 -5.4456 16 1 -1.0729 -7.6655 -4.8601 17 1 -0.4154 -5.4746 -5.6653 18 1 -0.3634 0.0005 -1.0276 19 1 -0.3634 -0.8902 0.5134 20 1 -0.3634 0.8898 0.5142 21 1 1.9671 2.1207 -0.0004 22 1 4.5159 1.2691 -0.0011 23 1 4.4721 -1.3514 -0.0046 24 1 2.6103 -3.1338 0.4338 25 1 0.9285 -2.5720 0.5889 26 1 0.7931 -2.2981 -1.8720 27 1 2.4748 -2.8601 -2.0270 28 1 1.8456 -5.0287 -1.0034 29 1 0.1636 -4.4675 -0.8482 30 1 -0.1553 -7.8428 -2.2849 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167344820.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:33 Heat of formation + Delta-G solvation = 7.998097 kcal Electronic energy + Delta-G solvation = -11573.703730 eV Core-core repulsion = 9561.324115 eV Total energy + Delta-G solvation = -2012.379615 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.06103 -36.55620 -34.55545 -32.38369 -31.91400 -28.22658 -26.71643 -25.10968 -22.31860 -21.41876 -19.92252 -18.53759 -17.56968 -16.54673 -16.07707 -15.74862 -14.71530 -14.52873 -14.15067 -13.87669 -13.48655 -13.34339 -13.28361 -12.98783 -12.65193 -12.61536 -12.43663 -12.37498 -11.66596 -11.54510 -11.29970 -10.59244 -9.44797 -8.82117 -8.24328 -6.35364 1.38422 1.39193 1.41552 1.50623 2.13729 2.17311 2.39022 3.09284 3.83379 4.03365 4.16645 4.31268 4.40347 4.54057 4.57934 4.76540 4.81302 4.86714 4.94233 5.05934 5.13896 5.44137 5.44797 5.49205 5.63274 5.78291 6.18607 6.22740 6.44854 6.57180 6.80052 7.34118 8.87150 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.062720 B = 0.006981 C = 0.006904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.319140 B = 4009.852590 C = 4054.654067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.004 4.004 3 C -0.221 4.221 4 C -0.215 4.215 5 C -0.034 4.034 6 N -0.447 5.447 7 C 0.109 3.891 8 C -0.104 4.104 9 C 0.029 3.971 10 C -0.547 4.547 11 H 0.055 0.945 12 C 0.004 3.996 13 N -0.930 5.930 14 Si 0.962 3.038 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.266 1.266 18 H 0.067 0.933 19 H 0.060 0.940 20 H 0.097 0.903 21 H 0.147 0.853 22 H 0.150 0.850 23 H 0.173 0.827 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.000 1.000 29 H 0.001 0.999 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.837 11.796 4.076 12.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.246 4.246 4 C -0.239 4.239 5 C -0.164 4.164 6 N -0.122 5.122 7 C -0.012 4.012 8 C -0.142 4.142 9 C -0.009 4.009 10 C -0.585 4.585 11 H 0.073 0.927 12 C -0.194 4.194 13 N -0.570 5.570 14 Si 0.787 3.213 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.190 1.190 18 H 0.086 0.914 19 H 0.079 0.921 20 H 0.115 0.885 21 H 0.165 0.835 22 H 0.168 0.832 23 H 0.190 0.810 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.659 11.267 4.126 12.290 hybrid contribution -0.102 -0.686 -0.795 1.055 sum 2.557 10.580 3.331 11.383 Atomic orbital electron populations 1.20355 0.87296 1.03664 1.02740 1.20880 0.94703 0.86238 1.09816 1.20932 0.93097 0.97932 1.12605 1.21118 0.97813 0.93801 1.11187 1.22226 0.86571 0.96596 1.11004 1.44409 1.06336 1.06036 1.55413 1.21930 1.01663 0.79202 0.98420 1.21716 1.00224 0.97548 0.94693 1.18920 0.95100 0.90977 0.95876 1.21627 1.44713 0.98085 0.94071 0.92703 1.25913 0.95102 0.96780 1.01635 1.70065 1.47011 1.06758 1.33134 0.85486 0.78144 0.78202 0.79480 1.19752 1.20462 1.19037 0.91393 0.92071 0.88453 0.83492 0.83222 0.80974 0.88704 0.89172 0.93174 0.93354 0.98153 0.98036 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.09 10.10 71.23 0.72 -1.37 16 2 C 0.00 -0.14 6.89 41.08 0.28 0.15 16 3 C -0.22 -6.32 10.76 22.14 0.24 -6.08 16 4 C -0.21 -6.02 10.86 22.14 0.24 -5.78 16 5 C -0.03 -1.02 11.42 83.21 0.95 -0.06 16 6 N -0.45 -14.32 2.75 -509.97 -1.40 -15.72 16 7 C 0.11 3.63 5.84 86.38 0.50 4.14 16 8 C -0.10 -4.22 5.48 30.59 0.17 -4.05 16 9 C 0.03 1.48 4.97 29.85 0.15 1.62 16 10 C -0.55 -30.94 9.11 25.60 0.23 -30.71 16 11 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 12 C 0.00 0.23 5.46 84.66 0.46 0.69 16 13 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 14 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 19 H 0.06 1.54 7.16 -2.39 -0.02 1.53 16 20 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 21 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 22 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 23 H 0.17 4.31 8.06 -2.91 -0.02 4.29 16 24 H 0.09 2.95 8.12 -2.39 -0.02 2.93 16 25 H 0.09 2.86 7.19 -2.39 -0.02 2.84 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.00 0.00 8.14 -2.39 -0.02 -0.01 16 29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -63.19 259.34 5.95 -57.25 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.09 Total: 9.22 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 3.95 Total: -41.47 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -1.12 Total: -70.96 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -63.19 5.95 -57.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167344820.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.247 kcal (2) G-P(sol) polarization free energy of solvation -63.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds