Wall clock time and date at job start Mon Mar 30 2020 02:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40891 * 126.29100 * 2 1 4 4 C 1.34851 * 107.41570 * 179.97438 * 3 2 1 5 5 C 1.50703 * 125.88627 * 180.02562 * 4 3 2 6 6 N 1.36336 * 108.22152 * 359.97438 * 4 3 2 7 7 C 1.46498 * 125.63855 * 179.97438 * 6 4 3 8 8 C 1.34849 * 126.29089 * 179.68194 * 2 1 3 9 9 C 1.50701 * 125.89261 * 0.02562 * 8 2 1 10 10 C 1.50703 * 109.47143 * 270.02369 * 9 8 2 11 11 H 1.07999 * 119.99508 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99938 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99807 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99855 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46990 * 90.00034 * 14 12 10 16 16 H 1.48504 * 109.46944 * 210.00118 * 14 12 10 17 17 H 1.48498 * 109.46887 * 329.99847 * 14 12 10 18 18 H 1.09002 * 109.47152 * 90.02772 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.02873 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.02853 * 1 2 3 21 21 H 1.08003 * 126.28935 * 359.97438 * 3 2 1 22 22 H 1.09001 * 109.47146 * 89.97666 * 5 4 3 23 23 H 1.09002 * 109.47161 * 209.97024 * 5 4 3 24 24 H 1.09000 * 109.47572 * 329.97442 * 5 4 3 25 25 H 1.09002 * 109.47062 * 90.02309 * 7 6 4 26 26 H 1.08996 * 109.47112 * 210.02807 * 7 6 4 27 27 H 1.09000 * 109.46813 * 330.02409 * 7 6 4 28 28 H 1.09007 * 109.47110 * 30.02436 * 9 8 2 29 29 H 1.09001 * 109.46932 * 150.02065 * 9 8 2 30 30 H 0.96998 * 119.99217 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.1356 0.0000 4 6 3.6169 0.6994 0.0006 5 6 4.8478 1.5689 0.0013 6 7 3.6014 -0.6639 0.0015 7 6 4.7822 -1.5310 0.0018 8 6 2.3052 -1.0869 0.0060 9 6 1.8441 -2.5216 0.0135 10 6 1.6893 -2.9922 1.4367 11 1 1.9038 -2.3196 2.2541 12 6 1.2738 -4.2812 1.6953 13 7 1.0131 -5.1002 0.6999 14 14 1.0827 -4.8646 3.4595 15 1 -0.3006 -4.5902 3.9245 16 1 1.3482 -6.3241 3.5297 17 1 2.0487 -4.1435 4.3268 18 1 -0.3633 -0.0005 -1.0277 19 1 -0.3633 0.8903 0.5134 20 1 -0.3633 -0.8898 0.5143 21 1 2.0176 2.1661 -0.0004 22 1 5.1438 1.7787 1.0292 23 1 5.6585 1.0515 -0.5117 24 1 4.6315 2.5053 -0.5128 25 1 5.0750 -1.7457 1.0296 26 1 4.5483 -2.4636 -0.5117 27 1 5.6018 -1.0289 -0.5122 28 1 0.8859 -2.5980 -0.5007 29 1 2.5806 -3.1426 -0.4965 30 1 0.7205 -6.0069 0.8819 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000200483179.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:14 Heat of formation + Delta-G solvation = 25.775656 kcal Electronic energy + Delta-G solvation = -12006.574865 eV Core-core repulsion = 9994.966142 eV Total energy + Delta-G solvation = -2011.608722 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.49141 -33.47093 -32.78816 -31.46381 -28.62987 -28.15839 -25.07927 -24.06679 -21.77711 -19.12684 -17.57386 -16.34858 -15.40788 -14.68420 -14.40214 -13.40672 -13.00342 -12.73601 -12.52708 -12.20401 -11.99100 -11.94376 -11.63375 -11.29290 -11.06291 -10.94779 -10.75040 -10.59808 -10.37910 -9.60357 -9.37276 -8.42828 -7.60578 -6.79970 -6.02152 -4.07496 3.09478 3.30255 3.36463 3.40691 3.77534 3.84549 4.45414 5.30110 5.36590 5.44999 5.54868 5.73089 5.91056 6.00982 6.10438 6.18568 6.30014 6.38630 6.53549 6.59141 6.91937 6.94831 7.36972 7.45259 7.53257 7.92117 8.03087 8.22458 8.28220 8.42598 8.97418 9.56473 11.05332 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.041677 B = 0.010998 C = 0.009967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.672345 B = 2545.348490 C = 2808.499504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.199 4.199 3 C -0.194 4.194 4 C -0.027 4.027 5 C -0.071 4.071 6 N -0.445 5.445 7 C 0.080 3.920 8 C 0.078 3.922 9 C 0.079 3.921 10 C -0.507 4.507 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.275 1.275 18 H 0.045 0.955 19 H 0.045 0.955 20 H 0.067 0.933 21 H 0.121 0.879 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.021 0.979 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.416 8.334 -1.487 10.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.204 4.204 3 C -0.219 4.219 4 C -0.137 4.137 5 C -0.129 4.129 6 N -0.122 5.122 7 C -0.062 4.062 8 C -0.035 4.035 9 C 0.042 3.958 10 C -0.546 4.546 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.200 1.200 18 H 0.064 0.936 19 H 0.064 0.936 20 H 0.086 0.914 21 H 0.139 0.861 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.681 7.939 -1.529 9.881 hybrid contribution -0.048 -0.409 1.011 1.091 sum 5.633 7.530 -0.518 9.418 Atomic orbital electron populations 1.19983 0.91051 1.01398 1.00067 1.19124 0.95106 0.91881 1.14314 1.20385 0.91569 0.97577 1.12419 1.20019 0.96154 0.82936 1.14558 1.20126 0.93577 0.97754 1.01426 1.43763 1.06163 1.04904 1.57388 1.21805 0.86493 0.95106 1.02783 1.21196 0.81272 0.98093 1.02893 1.17886 0.96792 0.83398 0.97750 1.21056 1.45165 0.96763 0.91598 0.92591 1.24997 0.95421 0.96688 0.97187 1.69957 1.46142 1.06598 1.30740 0.86551 0.78631 0.77700 0.84925 1.20497 1.21220 1.19951 0.93625 0.93601 0.91430 0.86126 0.92201 0.92734 0.91230 0.91501 0.89692 0.91386 0.94071 0.96050 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 9.98 36.01 0.36 -0.99 16 2 C -0.20 -4.42 6.14 -104.82 -0.64 -5.07 16 3 C -0.19 -3.85 10.71 -39.78 -0.43 -4.28 16 4 C -0.03 -0.51 6.89 -81.79 -0.56 -1.08 16 5 C -0.07 -0.97 10.10 36.01 0.36 -0.61 16 6 N -0.45 -9.20 3.15 -115.30 -0.36 -9.57 16 7 C 0.08 1.36 10.72 59.85 0.64 2.00 16 8 C 0.08 1.83 6.08 -81.79 -0.50 1.34 16 9 C 0.08 2.09 4.80 -29.03 -0.14 1.95 16 10 C -0.51 -14.35 9.09 -34.44 -0.31 -14.66 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 14 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 19 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 20 H 0.07 1.46 7.75 -51.93 -0.40 1.06 16 21 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.67 7.05 -51.93 -0.37 0.30 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.49 7.03 -51.93 -0.36 1.13 16 27 H 0.07 0.91 7.02 -51.93 -0.36 0.55 16 28 H 0.04 1.14 7.75 -51.92 -0.40 0.74 16 29 H 0.02 0.58 7.05 -51.93 -0.37 0.21 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 255.74 15.07 3.85 3.85 Total: -1.00 -30.91 255.74 -6.45 -37.37 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.34 Total: -2.90 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -1.32 Total: -19.83 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.37 Total: -35.13 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.91 -6.45 -37.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200483179.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.143 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds