Wall clock time and date at job start Mon Mar 30 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48504 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47196 * 299.99809 * 3 2 1 6 6 H 1.48503 * 109.47310 * 60.00032 * 3 2 1 7 7 C 1.37876 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00409 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99992 * 359.97438 * 7 2 1 10 10 O 1.42894 * 109.47481 * 179.97438 * 9 7 2 11 11 C 1.35995 * 117.00081 * 179.97438 * 10 9 7 12 12 C 1.38558 * 120.07405 * 359.96402 * 11 10 9 13 13 C 1.38247 * 119.99917 * 180.02562 * 12 11 10 14 14 C 1.38255 * 120.14468 * 359.97438 * 13 12 11 15 15 C 1.38241 * 120.14765 * 0.02562 * 14 13 12 16 16 C 1.38563 * 119.99765 * 359.97368 * 15 14 13 17 17 O 1.35999 * 120.07024 * 180.02562 * 16 15 14 18 18 H 0.96999 * 119.99996 * 359.97438 * 1 2 3 19 19 H 1.09003 * 109.46784 * 60.00119 * 9 7 2 20 20 H 1.09001 * 109.47168 * 300.00307 * 9 7 2 21 21 H 1.07995 * 120.00001 * 0.03822 * 12 11 10 22 22 H 1.07998 * 119.92703 * 180.27362 * 13 12 11 23 23 H 1.08004 * 119.92416 * 179.97438 * 14 13 12 24 24 H 1.07998 * 119.99988 * 180.02562 * 15 14 13 25 25 H 0.96696 * 114.00342 * 90.00115 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.6598 -4.8420 -0.0014 12 6 0.2864 -5.0253 0.0009 13 6 -0.2404 -6.3034 0.0018 14 6 0.6004 -7.4009 0.0000 15 6 1.9716 -7.2250 -0.0023 16 6 2.5061 -5.9466 -0.0032 17 8 3.8548 -5.7719 -0.0060 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 -0.3726 -4.1696 0.0017 22 1 -1.3111 -6.4450 -0.0009 23 1 0.1851 -8.3979 0.0011 24 1 2.6262 -8.0840 -0.0042 25 1 4.2431 -5.7212 -0.8901 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000204428530.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:00 Heat of formation + Delta-G solvation = -87.128103 kcal Electronic energy + Delta-G solvation = -11550.196165 eV Core-core repulsion = 9300.139811 eV Total energy + Delta-G solvation = -2250.056353 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.15634 -38.66335 -37.36904 -35.08345 -31.23877 -30.80988 -29.23947 -25.47375 -23.33037 -22.81285 -19.72751 -18.62055 -18.41528 -17.06833 -16.80111 -16.45222 -16.06819 -15.48211 -14.88735 -14.75498 -13.73544 -13.42564 -13.06364 -12.96638 -12.84041 -12.47916 -12.17817 -11.99705 -11.49486 -11.33474 -10.75031 -9.80678 -9.00577 -8.42624 -6.57203 0.26876 0.46985 1.37564 1.39163 1.54018 2.25074 2.66061 2.75007 2.92023 3.33631 3.98805 4.09305 4.33531 4.48372 4.63821 4.75653 4.92024 4.97558 5.34566 5.37092 5.48293 5.53318 5.79536 5.88163 6.43000 6.66258 6.95163 7.15477 8.70089 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.063788 B = 0.008677 C = 0.007675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.851048 B = 3226.289895 C = 3647.472566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.990 3.010 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.558 4.558 8 H 0.064 0.936 9 C 0.211 3.789 10 O -0.333 6.333 11 C 0.075 3.925 12 C -0.219 4.219 13 C -0.086 4.086 14 C -0.142 4.142 15 C -0.102 4.102 16 C 0.043 3.957 17 O -0.502 6.502 18 H 0.275 0.725 19 H 0.003 0.997 20 H -0.001 1.001 21 H 0.112 0.888 22 H 0.153 0.847 23 H 0.169 0.831 24 H 0.164 0.836 25 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 -12.189 -1.744 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.812 3.188 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.596 4.596 8 H 0.082 0.918 9 C 0.137 3.863 10 O -0.247 6.247 11 C 0.028 3.972 12 C -0.238 4.238 13 C -0.104 4.104 14 C -0.160 4.160 15 C -0.120 4.120 16 C -0.002 4.002 17 O -0.313 6.313 18 H 0.084 0.916 19 H 0.020 0.980 20 H 0.016 0.984 21 H 0.130 0.870 22 H 0.171 0.829 23 H 0.186 0.814 24 H 0.182 0.818 25 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 1.057 -12.009 -1.138 12.109 hybrid contribution -0.035 1.212 -0.477 1.303 sum 1.022 -10.797 -1.615 10.965 Atomic orbital electron populations 1.70056 1.07755 1.29072 1.49502 1.25973 0.96042 1.03378 0.93314 0.85044 0.78544 0.76726 0.78534 1.18853 1.19234 1.19405 1.21335 0.94291 0.90213 1.53726 0.91766 1.20196 0.88488 0.82792 0.94783 1.86101 1.38454 1.12636 1.87501 1.20275 0.93480 0.85803 0.97659 1.21425 0.93304 1.00092 1.08938 1.21333 1.01621 0.90577 0.96880 1.21346 0.92127 1.00098 1.02426 1.21544 0.96761 0.94797 0.98886 1.18161 0.82889 0.90597 1.08559 1.84809 1.16634 1.95142 1.34697 0.91627 0.97950 0.98361 0.86951 0.82907 0.81375 0.81826 0.74425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.29 21.45 0.28 -54.84 15 2 C 0.01 0.71 5.46 84.65 0.46 1.18 15 3 Si 0.99 44.19 29.54 68.60 2.03 46.22 15 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 7 C -0.56 -33.76 9.43 25.60 0.24 -33.52 15 8 H 0.06 3.86 7.81 -2.91 -0.02 3.84 15 9 C 0.21 12.20 4.49 71.24 0.32 12.52 15 10 O -0.33 -17.81 9.91 -79.63 -0.79 -18.60 15 11 C 0.07 3.30 6.70 22.57 0.15 3.45 15 12 C -0.22 -8.67 9.04 22.35 0.20 -8.47 15 13 C -0.09 -2.50 10.04 22.28 0.22 -2.27 15 14 C -0.14 -3.39 10.04 22.27 0.22 -3.17 15 15 C -0.10 -2.73 9.98 22.35 0.22 -2.50 15 16 C 0.04 1.57 6.72 22.57 0.15 1.72 15 17 O -0.50 -17.47 13.29 -79.68 -1.06 -18.53 15 18 H 0.27 15.02 8.31 -92.71 -0.77 14.25 15 19 H 0.00 0.16 7.67 -2.39 -0.02 0.14 15 20 H 0.00 -0.08 7.66 -2.39 -0.02 -0.10 15 21 H 0.11 4.89 6.30 -2.91 -0.02 4.87 15 22 H 0.15 3.38 8.06 -2.91 -0.02 3.36 15 23 H 0.17 2.51 8.06 -2.91 -0.02 2.48 15 24 H 0.16 3.18 8.06 -2.91 -0.02 3.16 15 25 H 0.40 10.06 9.06 -74.06 -0.67 9.39 15 Total: -1.00 -70.81 230.23 3.19 -67.62 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.53 Total: 9.19 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 2.20 Total: -31.07 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.28 Total: -54.84 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.85 Total: -37.12 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -70.81 3.19 -67.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204428530.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.508 kcal (2) G-P(sol) polarization free energy of solvation -70.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds