Wall clock time and date at job start Mon Mar 30 2020 01:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47214 * 2 1 4 4 N 1.32068 * 118.75900 * 270.02243 * 3 2 1 5 5 C 1.32024 * 121.30924 * 179.67920 * 4 3 2 6 6 C 1.40882 * 118.85256 * 0.57244 * 5 4 3 7 7 C 1.41074 * 121.09941 * 179.72361 * 6 5 4 8 8 H 1.07998 * 120.00166 * 154.66278 * 7 6 5 9 9 C 1.39955 * 120.00032 * 334.65080 * 7 6 5 10 10 N 1.30867 * 119.99798 * 334.92450 * 9 7 6 11 11 Si 1.86791 * 120.00203 * 154.92448 * 9 7 6 12 12 H 1.48502 * 109.47316 * 180.02562 * 11 9 7 13 13 H 1.48498 * 109.47251 * 300.00146 * 11 9 7 14 14 H 1.48500 * 109.47354 * 60.00284 * 11 9 7 15 15 C 1.42121 * 117.80636 * 359.44377 * 6 5 4 16 16 N 1.37778 * 120.70995 * 180.29556 * 15 6 5 17 17 N 1.31814 * 118.74827 * 90.00414 * 3 2 1 18 18 H 1.09004 * 109.47229 * 59.99819 * 1 2 3 19 19 H 1.09006 * 109.47516 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47137 * 299.99959 * 1 2 3 21 21 H 1.08999 * 109.47137 * 240.00041 * 2 1 3 22 22 H 1.08999 * 109.47152 * 120.00632 * 2 1 3 23 23 H 1.07999 * 120.57845 * 180.31315 * 5 4 3 24 24 H 0.97007 * 120.00181 * 354.23506 * 10 9 7 25 25 H 0.97001 * 120.00041 * 0.02562 * 16 15 6 26 26 H 0.97001 * 119.99882 * 180.02562 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2437 2.0200 -1.1578 5 6 2.6774 3.2656 -1.2165 6 6 2.9277 3.9557 -0.0141 7 6 3.3975 5.2859 -0.0216 8 1 3.2055 5.9312 0.8229 9 6 4.1125 5.7693 -1.1233 10 7 4.7655 4.9385 -1.8952 11 14 4.1347 7.6004 -1.4920 12 1 4.9565 7.8516 -2.7032 13 1 2.7475 8.0746 -1.7285 14 1 4.7175 8.3307 -0.3378 15 6 2.6856 3.2697 1.2068 16 7 2.9044 3.8897 2.4176 17 7 2.2437 2.0185 1.1557 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 2.8415 3.7458 -2.1698 24 1 4.8238 3.9997 -1.6578 25 1 3.2267 4.8042 2.4430 26 1 2.7360 3.4117 3.2447 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213829233.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:37 Heat of formation + Delta-G solvation = 15.997147 kcal Electronic energy + Delta-G solvation = -11745.704058 eV Core-core repulsion = 9630.130965 eV Total energy + Delta-G solvation = -2115.573094 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.25463 -35.03137 -34.13813 -32.39078 -30.56114 -28.83042 -25.61683 -23.05796 -22.09681 -20.58107 -17.99766 -17.00420 -16.06407 -14.56136 -14.22856 -14.02655 -13.68880 -13.20440 -13.13655 -12.40619 -11.96019 -11.59395 -11.23667 -11.00348 -10.50105 -10.46327 -10.44093 -10.30167 -9.47053 -8.97424 -8.42830 -7.80741 -7.42193 -7.15654 -4.43375 2.54549 2.90005 3.09568 3.19114 3.30440 3.93496 4.53463 4.64139 5.37666 5.50051 5.67704 6.04070 6.05959 6.11319 6.38390 6.41066 6.70271 6.76564 6.86145 7.15703 7.52833 7.69663 7.87818 7.95192 8.33054 8.59759 8.66574 9.05229 9.88508 9.93279 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.055533 B = 0.011149 C = 0.009909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.083195 B = 2510.879972 C = 2825.115295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 C 0.196 3.804 4 N -0.517 5.517 5 C 0.012 3.988 6 C -0.031 4.031 7 C -0.505 4.505 8 H 0.076 0.924 9 C 0.037 3.963 10 N -0.792 5.792 11 Si 1.068 2.932 12 H -0.273 1.273 13 H -0.274 1.274 14 H -0.276 1.276 15 C 0.337 3.663 16 N -0.849 5.849 17 N -0.559 5.559 18 H 0.052 0.948 19 H 0.048 0.952 20 H 0.050 0.950 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.143 0.857 24 H 0.298 0.702 25 H 0.403 0.597 26 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.430 -0.037 3.382 4.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.068 4.068 4 N -0.232 5.232 5 C -0.152 4.152 6 C -0.040 4.040 7 C -0.535 4.535 8 H 0.094 0.906 9 C -0.185 4.185 10 N -0.415 5.415 11 Si 0.891 3.109 12 H -0.197 1.197 13 H -0.200 1.200 14 H -0.201 1.201 15 C 0.088 3.912 16 N -0.397 5.397 17 N -0.283 5.283 18 H 0.071 0.929 19 H 0.067 0.933 20 H 0.069 0.931 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.160 0.840 24 H 0.112 0.888 25 H 0.233 0.767 26 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.187 0.048 2.104 3.035 hybrid contribution -0.133 -0.010 1.498 1.504 sum -2.320 0.038 3.603 4.285 Atomic orbital electron populations 1.21669 0.95836 1.00325 1.01748 1.19807 0.94999 0.90518 1.01419 1.21550 1.05186 0.96890 0.83222 1.67465 1.14493 1.11529 1.29755 1.22664 1.04544 0.90769 0.97207 1.18800 0.97976 0.95566 0.91703 1.20137 1.31815 0.95937 1.05626 0.90573 1.27058 0.91458 1.08092 0.91882 1.70490 1.26890 1.08397 1.35709 0.83581 0.77841 0.71960 0.77477 1.19728 1.19954 1.20136 1.18637 0.97300 0.88574 0.86725 1.41494 1.76970 1.17184 1.04025 1.67075 1.19952 1.09897 1.31417 0.92924 0.93262 0.93117 0.91343 0.91614 0.83996 0.88831 0.76658 0.78623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.89 37.16 0.37 -1.97 15 2 C -0.03 -0.54 6.35 -27.89 -0.18 -0.72 15 3 C 0.20 4.79 6.89 -156.94 -1.08 3.71 15 4 N -0.52 -13.49 10.29 -10.15 -0.10 -13.59 15 5 C 0.01 0.32 9.24 -16.47 -0.15 0.17 15 6 C -0.03 -0.80 5.33 -106.33 -0.57 -1.37 15 7 C -0.50 -12.65 8.51 -37.86 -0.32 -12.97 15 8 H 0.08 1.78 6.85 -52.49 -0.36 1.42 15 9 C 0.04 0.90 4.99 -17.32 -0.09 0.82 15 10 N -0.79 -20.59 12.36 55.55 0.69 -19.91 15 11 Si 1.07 20.57 30.00 -169.99 -5.10 15.47 15 12 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 13 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 14 H -0.28 -4.98 7.11 56.52 0.40 -4.58 15 15 C 0.34 8.33 7.86 -154.71 -1.22 7.11 15 16 N -0.85 -16.96 8.97 31.57 0.28 -16.68 15 17 N -0.56 -13.85 10.33 -9.48 -0.10 -13.94 15 18 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 19 H 0.05 0.68 8.14 -51.93 -0.42 0.25 15 20 H 0.05 0.89 8.14 -51.93 -0.42 0.46 15 21 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 22 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.14 3.86 6.59 -52.49 -0.35 3.51 15 24 H 0.30 8.13 6.66 -40.82 -0.27 7.85 15 25 H 0.40 7.47 7.18 -40.82 -0.29 7.18 15 26 H 0.39 6.72 8.95 -40.82 -0.37 6.36 15 LS Contribution 229.28 15.07 3.46 3.46 Total: -1.00 -28.80 229.28 -6.66 -35.46 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -2.54 Total: 14.97 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -3.24 Total: -5.23 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: 0.77 Total: -64.12 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.10 Total: 15.47 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.80 -6.66 -35.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213829233.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.453 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds