Wall clock time and date at job start Mon Mar 30 2020 02:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38391 * 120.00254 * 180.02562 * 2 1 3 5 5 C 1.39979 * 119.93135 * 4.71940 * 4 2 1 6 6 C 1.36852 * 118.25575 * 179.77858 * 5 4 2 7 7 C 1.41245 * 118.05507 * 0.48962 * 6 5 4 8 8 C 1.41155 * 120.18043 * 179.76610 * 7 6 5 9 9 H 1.08004 * 120.00305 * 359.97438 * 8 7 6 10 10 C 1.39985 * 120.00292 * 179.97438 * 8 7 6 11 11 N 1.30797 * 119.99625 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00468 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46968 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47183 * 119.99908 * 12 10 8 15 15 H 1.48503 * 109.47074 * 240.00246 * 12 10 8 16 16 N 1.33707 * 119.63741 * 359.74476 * 7 6 5 17 17 N 1.28401 * 121.80212 * 0.02562 * 16 7 6 18 18 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 19 19 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 20 20 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 21 21 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 22 22 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 23 23 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 24 24 H 1.07997 * 120.86892 * 0.02562 * 5 4 2 25 25 H 1.07994 * 120.96946 * 180.23154 * 6 5 4 26 26 H 0.97004 * 120.00059 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1985 -0.0005 5 6 1.4593 -2.4078 -0.1009 6 6 2.1781 -3.5723 -0.1028 7 6 3.5836 -3.4855 0.0075 8 6 4.3686 -4.6587 0.0152 9 1 3.8947 -5.6261 -0.0629 10 6 5.7613 -4.5683 0.1241 11 7 6.3351 -3.3968 0.2192 12 14 6.8002 -6.1207 0.1335 13 1 5.9166 -7.3083 0.0138 14 1 7.7458 -6.0905 -1.0110 15 1 7.5639 -6.1975 1.4048 16 7 4.1665 -2.2861 0.1041 17 7 3.4827 -1.1992 0.1003 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3633 0.8900 0.5139 20 1 -0.3633 -0.8900 0.5139 21 1 1.4892 2.0973 0.0005 22 1 2.8242 1.3264 0.8899 23 1 2.8241 1.3265 -0.8900 24 1 0.3822 -2.4213 -0.1789 25 1 1.6849 -4.5298 -0.1819 26 1 7.3001 -3.3342 0.2950 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213829313.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:41 Heat of formation + Delta-G solvation = 43.745970 kcal Electronic energy + Delta-G solvation = -11656.887370 eV Core-core repulsion = 9542.517556 eV Total energy + Delta-G solvation = -2114.369814 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.83868 -37.54702 -35.41124 -33.41550 -31.69571 -29.07039 -28.04530 -25.44564 -24.15289 -22.36154 -19.60538 -17.82596 -17.70748 -16.71925 -16.03484 -15.67168 -15.09614 -14.52549 -14.44862 -14.01580 -13.35622 -13.09502 -12.93416 -12.80810 -12.73576 -12.48145 -11.89308 -11.54679 -11.23118 -10.68292 -10.49756 -9.53446 -8.59820 -8.34524 -6.39491 0.70601 1.00803 1.43324 1.56826 1.60070 2.26357 2.45331 2.87737 3.80269 4.15851 4.25269 4.30233 4.56837 4.61127 4.64159 4.71721 4.89971 4.93866 5.02130 5.23267 5.27348 5.50491 5.64291 6.23712 6.54480 6.70815 6.80813 6.92083 8.49328 9.03305 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.081388 B = 0.009639 C = 0.008676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.947711 B = 2904.099054 C = 3226.645559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.634 5.634 3 C 0.119 3.881 4 C 0.212 3.788 5 C -0.155 4.155 6 C -0.167 4.167 7 C 0.123 3.877 8 C -0.464 4.464 9 H 0.098 0.902 10 C 0.016 3.984 11 N -0.776 5.776 12 Si 0.994 3.006 13 H -0.248 1.248 14 H -0.269 1.269 15 H -0.269 1.269 16 N -0.288 5.288 17 N -0.336 5.336 18 H 0.051 0.949 19 H 0.089 0.911 20 H 0.064 0.936 21 H 0.102 0.898 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.157 0.843 25 H 0.143 0.857 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.577 1.709 -0.402 8.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.357 5.357 3 C -0.024 4.024 4 C -0.031 4.031 5 C -0.186 4.186 6 C -0.198 4.198 7 C -0.012 4.012 8 C -0.500 4.500 9 H 0.116 0.884 10 C -0.203 4.203 11 N -0.400 5.400 12 Si 0.814 3.186 13 H -0.171 1.171 14 H -0.194 1.194 15 H -0.194 1.194 16 N -0.135 5.135 17 N -0.184 5.184 18 H 0.069 0.931 19 H 0.108 0.892 20 H 0.083 0.917 21 H 0.121 0.879 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.174 0.826 25 H 0.161 0.839 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.069 2.853 -0.237 7.627 hybrid contribution -0.598 -1.238 -0.119 1.380 sum -7.667 1.615 -0.356 7.843 Atomic orbital electron populations 1.21723 0.77333 1.03446 1.01499 1.45709 1.05445 1.01827 1.82746 1.21301 0.96558 0.84882 0.99671 1.20126 0.91549 0.87853 1.03527 1.21457 1.01162 0.91274 1.04671 1.22128 0.94296 0.99182 1.04238 1.20499 0.91704 0.94718 0.94319 1.19758 0.92222 0.92784 1.45207 0.88367 1.27070 0.99809 1.00792 0.92650 1.70247 1.11624 1.27004 1.31162 0.84990 0.77755 0.77339 0.78540 1.17063 1.19421 1.19397 1.74192 1.26037 0.94002 1.19269 1.72842 1.04951 1.24603 1.15969 0.93077 0.89204 0.91691 0.87932 0.95257 0.95371 0.82587 0.83883 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.55 10.04 127.77 1.28 3.83 15 2 N -0.63 -23.41 3.37 -753.20 -2.54 -25.95 15 3 C 0.12 3.94 10.18 127.77 1.30 5.24 15 4 C 0.21 10.05 7.45 133.31 0.99 11.04 15 5 C -0.16 -6.68 9.19 22.37 0.21 -6.48 15 6 C -0.17 -7.98 9.89 22.68 0.22 -7.75 15 7 C 0.12 7.07 6.63 40.31 0.27 7.34 15 8 C -0.46 -25.69 9.15 23.41 0.21 -25.47 15 9 H 0.10 4.89 7.85 -2.91 -0.02 4.87 15 10 C 0.02 0.86 5.50 85.27 0.47 1.33 15 11 N -0.78 -45.13 11.48 21.83 0.25 -44.88 15 12 Si 0.99 39.33 29.56 68.60 2.03 41.36 15 13 H -0.25 -9.11 7.11 99.48 0.71 -8.40 15 14 H -0.27 -10.34 7.11 99.48 0.71 -9.63 15 15 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 16 N -0.29 -17.93 9.08 -51.93 -0.47 -18.40 15 17 N -0.34 -19.22 10.74 -54.94 -0.59 -19.81 15 18 H 0.05 1.14 8.14 -2.39 -0.02 1.12 15 19 H 0.09 1.66 7.92 -2.39 -0.02 1.64 15 20 H 0.06 1.55 6.39 -2.38 -0.02 1.54 15 21 H 0.10 2.34 7.79 -2.39 -0.02 2.32 15 22 H 0.03 1.06 8.14 -2.39 -0.02 1.04 15 23 H 0.03 1.01 8.14 -2.39 -0.02 0.99 15 24 H 0.16 5.14 6.33 -2.91 -0.02 5.13 15 25 H 0.14 5.78 8.06 -2.91 -0.02 5.75 15 26 H 0.28 14.66 8.30 -92.71 -0.77 13.89 15 Total: -1.00 -72.78 230.63 4.81 -67.97 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.18 Total: 10.64 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 4.96 Total: -10.93 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -3.35 Total: -109.04 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -72.78 4.81 -67.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213829313.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.718 kcal (2) G-P(sol) polarization free energy of solvation -72.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds