Wall clock time and date at job start Mon Mar 30 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38809 * 119.73304 * 2 1 4 4 C 1.36452 * 120.58316 * 180.02562 * 3 2 1 5 5 C 1.40806 * 120.02034 * 359.97438 * 4 3 2 6 6 C 1.41179 * 120.26321 * 180.02562 * 5 4 3 7 7 H 1.07994 * 119.99857 * 205.40079 * 6 5 4 8 8 C 1.39921 * 119.99946 * 25.67437 * 6 5 4 9 9 N 1.30865 * 120.00372 * 16.48170 * 8 6 5 10 10 Si 1.86806 * 119.99828 * 196.48811 * 8 6 5 11 11 H 1.48501 * 109.47281 * 59.99470 * 10 8 6 12 12 H 1.48499 * 109.46901 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46718 * 299.99696 * 10 8 6 14 14 C 1.41156 * 119.46964 * 0.27824 * 5 4 3 15 15 O 1.35746 * 120.28546 * 179.72531 * 14 5 4 16 16 C 1.38661 * 119.72766 * 180.02562 * 2 1 3 17 17 O 1.36008 * 120.02717 * 0.02562 * 16 2 1 18 18 H 1.08997 * 109.47504 * 89.99542 * 1 2 3 19 19 H 1.09004 * 109.47296 * 210.00208 * 1 2 3 20 20 H 1.09002 * 109.47102 * 329.99735 * 1 2 3 21 21 H 1.08006 * 119.70941 * 0.02562 * 3 2 1 22 22 H 1.08001 * 119.99141 * 179.97438 * 4 3 2 23 23 H 0.97006 * 120.00295 * 179.97438 * 9 8 6 24 24 H 0.96700 * 114.00065 * 89.99458 * 15 14 5 25 25 H 0.96703 * 113.99935 * 89.99118 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2053 0.0000 4 6 3.5598 1.2256 -0.0005 5 6 4.2823 0.0170 -0.0005 6 6 5.6940 0.0320 -0.0005 7 1 6.2429 -0.8071 -0.4017 8 6 6.3820 1.1314 0.5245 9 7 5.7590 1.9861 1.2952 10 14 8.1899 1.3795 0.1251 11 1 8.3577 1.5192 -1.3438 12 1 8.6814 2.6086 0.7981 13 1 8.9676 0.2081 0.6029 14 6 3.5838 -1.2096 -0.0060 15 8 4.2637 -2.3845 -0.0117 16 6 2.1946 -1.2041 -0.0005 17 8 1.5095 -2.3791 -0.0016 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3634 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5139 21 1 1.6464 2.1354 0.0004 22 1 4.0858 2.1689 -0.0009 23 1 6.2360 2.7481 1.6595 24 1 4.4611 -2.7290 0.8701 25 1 1.3117 -2.7182 -0.8853 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213835057.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:44 Heat of formation + Delta-G solvation = -102.409143 kcal Electronic energy + Delta-G solvation = -11922.608559 eV Core-core repulsion = 9671.889570 eV Total energy + Delta-G solvation = -2250.718989 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.55354 -37.70702 -37.18614 -35.44973 -32.45679 -29.77157 -29.05141 -25.59727 -22.91939 -22.13536 -19.81649 -18.49039 -17.98139 -17.28797 -16.35129 -15.99582 -15.66528 -14.66721 -14.31056 -14.01706 -13.64651 -13.37444 -13.15416 -12.86852 -12.50876 -12.31765 -12.02576 -11.88552 -11.59050 -11.03756 -10.62009 -9.23491 -9.08256 -8.69290 -6.38741 0.79385 0.83014 1.37315 1.48042 1.51162 2.18569 2.58843 3.40902 3.61055 3.97281 4.41272 4.63444 4.75027 4.95918 5.06751 5.08727 5.27137 5.31369 5.47534 5.79567 5.92600 6.06566 6.17226 6.47945 6.77053 6.79876 6.97748 7.37189 8.25599 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.053613 B = 0.012120 C = 0.010178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.136305 B = 2309.755100 C = 2750.264140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.227 4.227 3 C -0.097 4.097 4 C -0.177 4.177 5 C 0.068 3.932 6 C -0.484 4.484 7 H 0.074 0.926 8 C 0.036 3.964 9 N -0.818 5.818 10 Si 0.986 3.014 11 H -0.261 1.261 12 H -0.263 1.263 13 H -0.261 1.261 14 C -0.072 4.072 15 O -0.496 6.496 16 C 0.100 3.900 17 O -0.504 6.504 18 H 0.065 0.935 19 H 0.058 0.942 20 H 0.064 0.936 21 H 0.121 0.879 22 H 0.110 0.890 23 H 0.292 0.708 24 H 0.370 0.630 25 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 -0.694 -1.698 3.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.228 4.228 3 C -0.115 4.115 4 C -0.197 4.197 5 C 0.065 3.935 6 C -0.513 4.513 7 H 0.092 0.908 8 C -0.180 4.180 9 N -0.444 5.444 10 Si 0.807 3.193 11 H -0.186 1.186 12 H -0.187 1.187 13 H -0.185 1.185 14 C -0.118 4.118 15 O -0.304 6.304 16 C 0.056 3.944 17 O -0.314 6.314 18 H 0.084 0.916 19 H 0.077 0.923 20 H 0.083 0.917 21 H 0.139 0.861 22 H 0.128 0.872 23 H 0.103 0.897 24 H 0.223 0.777 25 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.852 -0.365 -1.551 3.267 hybrid contribution 0.886 -0.028 0.056 0.888 sum -1.967 -0.393 -1.495 2.501 Atomic orbital electron populations 1.20342 0.89642 1.01943 1.01594 1.19845 0.97076 0.91487 1.14431 1.20571 0.93901 0.96909 1.00138 1.21032 0.93592 0.97892 1.07148 1.18179 0.94501 0.90956 0.89887 1.19642 0.91764 1.03737 1.36138 0.90788 1.26801 1.05736 0.93746 0.91678 1.69858 1.40820 1.11646 1.22065 0.85188 0.75600 0.78872 0.79669 1.18571 1.18703 1.18504 1.19074 0.89033 0.85717 1.17966 1.84631 1.76891 1.36194 1.32671 1.18515 0.88326 0.85364 1.02202 1.84616 1.75933 1.36796 1.34078 0.91642 0.92330 0.91713 0.86065 0.87188 0.89721 0.77706 0.75034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.60 9.77 71.24 0.70 -1.91 15 2 C -0.23 -9.84 5.91 -19.63 -0.12 -9.96 15 3 C -0.10 -4.43 9.61 21.99 0.21 -4.22 15 4 C -0.18 -9.30 8.63 22.48 0.19 -9.11 15 5 C 0.07 3.75 5.57 -21.21 -0.12 3.63 15 6 C -0.48 -26.59 8.72 23.40 0.20 -26.39 15 7 H 0.07 4.06 7.65 -2.91 -0.02 4.04 15 8 C 0.04 1.82 5.16 85.24 0.44 2.26 15 9 N -0.82 -42.08 10.95 21.82 0.24 -41.84 15 10 Si 0.99 38.06 29.59 68.60 2.03 40.09 15 11 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 12 H -0.26 -9.41 7.11 99.48 0.71 -8.71 15 13 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 14 C -0.07 -3.72 6.76 23.15 0.16 -3.57 15 15 O -0.50 -23.93 12.59 -76.83 -0.97 -24.89 15 16 C 0.10 4.66 6.68 22.53 0.15 4.81 15 17 O -0.50 -19.87 12.30 -79.76 -0.98 -20.85 15 18 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 19 H 0.06 1.89 7.51 -2.39 -0.02 1.87 15 20 H 0.06 1.93 8.08 -2.39 -0.02 1.91 15 21 H 0.12 4.77 8.06 -2.91 -0.02 4.74 15 22 H 0.11 5.93 6.19 -2.91 -0.02 5.91 15 23 H 0.29 13.47 8.30 -92.70 -0.77 12.70 15 24 H 0.37 15.31 9.06 -74.06 -0.67 14.64 15 25 H 0.39 11.89 9.06 -74.06 -0.67 11.22 15 Total: -1.00 -62.12 225.61 2.03 -60.10 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -0.11 Total: 31.86 kcal Atomic # 6 Polarization: -46.27 SS G_CDS: 1.82 Total: -44.45 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.24 Total: -41.84 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.95 Total: -45.75 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Total: -62.12 2.03 -60.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213835057.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.313 kcal (2) G-P(sol) polarization free energy of solvation -62.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds