Wall clock time and date at job start Mon Mar 30 2020 02:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39002 * 120.00479 * 2 1 4 4 O 1.35691 * 119.77089 * 0.03921 * 3 2 1 5 5 C 1.39435 * 120.45831 * 180.29437 * 3 2 1 6 6 C 1.36345 * 120.45607 * 359.44556 * 5 3 2 7 7 C 1.40780 * 119.98460 * 0.27449 * 6 5 3 8 8 C 1.41028 * 120.22364 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00498 * 150.01623 * 8 7 6 10 10 C 1.39880 * 119.99768 * 330.01407 * 8 7 6 11 11 N 1.30929 * 120.00005 * 161.80832 * 10 8 7 12 12 Si 1.86799 * 119.99729 * 341.80989 * 10 8 7 13 13 H 1.48501 * 109.47172 * 95.41271 * 12 10 8 14 14 H 1.48503 * 109.46620 * 215.40514 * 12 10 8 15 15 H 1.48500 * 109.47463 * 335.40630 * 12 10 8 16 16 C 1.38122 * 119.99615 * 179.73908 * 2 1 3 17 17 O 1.35660 * 120.22722 * 359.96488 * 16 2 1 18 18 H 1.09003 * 109.46941 * 270.25846 * 1 2 3 19 19 H 1.09003 * 109.46315 * 30.25630 * 1 2 3 20 20 H 1.08999 * 109.46856 * 150.25689 * 1 2 3 21 21 H 0.96703 * 114.00019 * 270.25779 * 4 3 2 22 22 H 1.08000 * 119.77328 * 179.71356 * 5 3 2 23 23 H 1.07997 * 120.00696 * 180.29846 * 6 5 3 24 24 H 0.96994 * 119.99770 * 180.02562 * 11 10 8 25 25 H 0.96704 * 113.99549 * 270.01684 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2022 1.2037 0.0000 4 8 1.5191 2.3762 0.0008 5 6 3.5965 1.2148 -0.0062 6 6 4.2969 0.0450 -0.0009 7 6 3.6121 -1.1850 0.0050 8 6 4.3316 -2.3980 0.0110 9 1 3.9103 -3.2735 0.4826 10 6 5.5909 -2.4672 -0.5940 11 7 6.4070 -3.4469 -0.2967 12 14 6.1081 -1.1618 -1.8260 13 1 6.9003 -0.1138 -1.1336 14 1 6.9354 -1.7855 -2.8899 15 1 4.9001 -0.5485 -2.4340 16 6 2.1976 -1.1962 0.0054 17 8 1.5239 -2.3737 0.0115 18 1 -0.3633 0.0046 1.0277 19 1 -0.3632 0.8877 -0.5178 20 1 -0.3633 -0.8923 -0.5098 21 1 1.3172 2.7144 -0.8824 22 1 4.1253 2.1564 -0.0108 23 1 5.3767 0.0621 -0.0009 24 1 7.2804 -3.4946 -0.7159 25 1 1.3288 -2.7106 0.8967 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213835145.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:33 Heat of formation + Delta-G solvation = -101.318480 kcal Electronic energy + Delta-G solvation = -11998.259578 eV Core-core repulsion = 9747.587884 eV Total energy + Delta-G solvation = -2250.671694 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.67810 -38.37080 -36.73179 -35.20025 -33.12347 -31.07175 -27.67461 -26.40216 -22.68220 -22.48365 -19.71786 -19.02310 -17.94029 -17.35339 -16.77641 -15.82917 -15.44874 -15.10949 -14.73498 -14.23736 -13.79401 -13.57720 -13.39636 -12.98451 -12.71138 -12.44505 -11.94872 -11.75904 -11.41342 -11.18768 -10.79209 -9.31878 -9.29555 -8.95646 -6.48155 0.55582 0.64057 1.23445 1.36850 1.46097 2.08710 2.44124 3.23890 3.50824 4.00278 4.15499 4.27226 4.55826 4.79342 4.85027 4.98216 5.01640 5.27721 5.42554 5.57188 5.70784 5.84109 6.05419 6.22225 6.50151 6.70655 7.11761 7.26062 8.12186 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.043889 B = 0.014912 C = 0.011902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.824589 B = 1877.181606 C = 2351.951625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.103 4.103 3 C -0.011 4.011 4 O -0.496 6.496 5 C -0.103 4.103 6 C -0.230 4.230 7 C 0.046 3.954 8 C -0.463 4.463 9 H 0.061 0.939 10 C 0.045 3.955 11 N -0.842 5.842 12 Si 0.964 3.036 13 H -0.253 1.253 14 H -0.275 1.275 15 H -0.256 1.256 16 C -0.005 4.005 17 O -0.494 6.494 18 H 0.071 0.929 19 H 0.076 0.924 20 H 0.064 0.936 21 H 0.386 0.614 22 H 0.130 0.870 23 H 0.107 0.893 24 H 0.296 0.704 25 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.381 7.587 -1.836 9.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.056 4.056 4 O -0.305 6.305 5 C -0.122 4.122 6 C -0.249 4.249 7 C 0.043 3.957 8 C -0.492 4.492 9 H 0.079 0.921 10 C -0.170 4.170 11 N -0.468 5.468 12 Si 0.787 3.213 13 H -0.178 1.178 14 H -0.201 1.201 15 H -0.180 1.180 16 C -0.051 4.051 17 O -0.303 6.303 18 H 0.090 0.910 19 H 0.095 0.905 20 H 0.083 0.917 21 H 0.241 0.759 22 H 0.148 0.852 23 H 0.124 0.876 24 H 0.106 0.894 25 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.084 7.381 -1.835 9.149 hybrid contribution 0.540 -0.166 -0.234 0.611 sum -4.545 7.216 -2.069 8.775 Atomic orbital electron populations 1.20473 0.89388 1.02661 1.02365 1.20483 0.97573 0.91779 1.00587 1.17736 0.89100 0.84538 1.14233 1.84762 1.76015 1.35893 1.33873 1.20959 0.93809 0.97893 0.99530 1.20605 0.98616 0.92326 1.13385 1.18278 0.92412 0.93374 0.91656 1.19257 1.00410 0.96903 1.32602 0.92089 1.26864 0.94579 0.98046 0.97491 1.69750 1.08185 1.31946 1.36912 0.85505 0.79254 0.78273 0.78225 1.17762 1.20128 1.18024 1.18403 0.88892 0.84717 1.13092 1.84677 1.75980 1.36743 1.32899 0.91031 0.90494 0.91720 0.75919 0.85178 0.87555 0.89388 0.76802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.96 9.56 71.24 0.68 -2.28 15 2 C -0.10 -4.23 5.90 -19.71 -0.12 -4.34 15 3 C -0.01 -0.43 6.69 22.74 0.15 -0.28 15 4 O -0.50 -16.13 12.51 -90.10 -1.13 -17.26 15 5 C -0.10 -4.29 9.91 22.12 0.22 -4.07 15 6 C -0.23 -10.85 7.10 22.45 0.16 -10.69 15 7 C 0.05 2.36 5.11 -21.18 -0.11 2.26 15 8 C -0.46 -26.01 9.18 23.35 0.21 -25.80 15 9 H 0.06 3.67 7.90 -2.91 -0.02 3.65 15 10 C 0.05 2.43 5.40 85.22 0.46 2.89 15 11 N -0.84 -45.88 13.93 21.82 0.30 -45.58 15 12 Si 0.96 42.54 24.52 68.60 1.68 44.22 15 13 H -0.25 -10.34 6.71 99.48 0.67 -9.68 15 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 15 H -0.26 -11.67 6.86 99.48 0.68 -10.99 15 16 C -0.01 -0.25 6.70 23.04 0.15 -0.10 15 17 O -0.49 -21.68 11.89 -89.76 -1.07 -22.75 15 18 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 19 H 0.08 2.13 7.53 -2.39 -0.02 2.11 15 20 H 0.06 2.05 7.53 -2.39 -0.02 2.03 15 21 H 0.39 8.78 9.06 -74.06 -0.67 8.11 15 22 H 0.13 4.59 8.06 -2.91 -0.02 4.57 15 23 H 0.11 4.94 4.74 -2.91 -0.01 4.93 15 24 H 0.30 14.40 8.30 -92.71 -0.77 13.63 15 25 H 0.38 13.37 9.06 -74.05 -0.67 12.70 15 Total: -1.00 -62.71 219.41 1.44 -61.27 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.17 Total: 22.51 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 1.82 Total: -42.41 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.30 Total: -45.58 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -2.19 Total: -40.01 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.68 Total: 44.22 kcal Total: -62.71 1.44 -61.27 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213835145.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.045 kcal (2) G-P(sol) polarization free energy of solvation -62.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds