Wall clock time and date at job start Mon Mar 30 2020 02:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36342 * 119.77271 * 2 1 4 4 C 1.40772 * 119.99193 * 179.72338 * 3 2 1 5 5 C 1.41027 * 120.22841 * 180.02562 * 4 3 2 6 6 H 1.07992 * 120.00724 * 204.80249 * 5 4 3 7 7 C 1.39878 * 119.99416 * 24.80588 * 5 4 3 8 8 N 1.30924 * 120.00266 * 17.80038 * 7 5 4 9 9 Si 1.86801 * 119.99729 * 197.79922 * 7 5 4 10 10 H 1.48503 * 109.46918 * 60.00087 * 9 7 5 11 11 H 1.48497 * 109.47245 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47239 * 299.99999 * 9 7 5 13 13 C 1.41470 * 119.55190 * 0.02562 * 4 3 2 14 14 O 1.35657 * 120.22479 * 179.97438 * 13 4 3 15 15 C 1.38117 * 119.54345 * 0.02562 * 13 4 3 16 16 C 1.39003 * 120.00364 * 359.97438 * 15 13 4 17 17 O 1.35686 * 119.77221 * 180.02562 * 16 15 13 18 18 H 1.08993 * 109.46898 * 90.00311 * 1 2 3 19 19 H 1.09002 * 109.46685 * 210.00287 * 1 2 3 20 20 H 1.08999 * 109.47248 * 329.99771 * 1 2 3 21 21 H 1.08003 * 120.00083 * 359.74602 * 3 2 1 22 22 H 0.96993 * 119.99974 * 180.02562 * 8 7 5 23 23 H 0.96706 * 113.99404 * 95.04949 * 14 13 4 24 24 H 1.07998 * 119.99278 * 180.02562 * 15 13 4 25 25 H 0.96703 * 114.00124 * 269.99889 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1840 1.1835 0.0000 4 6 3.5917 1.1888 0.0059 5 6 4.2970 2.4101 0.0065 6 1 5.3039 2.4524 -0.3817 7 6 3.6924 3.5666 0.5099 8 7 2.6412 3.4716 1.2846 9 14 4.3847 5.2466 0.0769 10 1 4.3458 5.4334 -1.3958 11 1 3.5695 6.3015 0.7309 12 1 5.7890 5.3405 0.5509 13 6 4.2941 -0.0391 0.0112 14 8 5.6507 -0.0499 0.0164 15 6 3.5893 -1.2269 0.0100 16 6 2.1994 -1.2104 0.0042 17 8 1.5117 -2.3800 0.0036 18 1 -0.3633 -0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3634 0.8899 0.5139 21 1 1.6403 2.1166 -0.0041 22 1 2.2218 4.2735 1.6334 23 1 6.0399 -0.1288 0.8981 24 1 4.1182 -2.1685 0.0145 25 1 1.3160 -2.7208 -0.8800 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213835384.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:47 Heat of formation + Delta-G solvation = -103.035185 kcal Electronic energy + Delta-G solvation = -11893.030299 eV Core-core repulsion = 9642.284163 eV Total energy + Delta-G solvation = -2250.746136 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.42754 -38.35003 -36.74515 -35.16096 -32.42693 -30.99281 -27.45163 -26.28895 -23.18214 -21.87844 -19.44463 -19.13066 -17.62249 -17.25969 -16.40608 -15.78048 -15.50324 -14.98020 -14.38949 -13.99265 -13.64892 -13.49799 -13.30131 -12.86827 -12.74661 -12.24913 -11.91058 -11.75939 -11.16616 -11.02758 -10.94103 -9.35038 -9.06476 -8.68744 -6.34572 0.73814 0.89946 1.37951 1.47818 1.51487 2.18842 2.57026 3.43030 3.62875 4.14042 4.27482 4.45559 4.67429 4.87943 5.04823 5.11801 5.24749 5.34778 5.54847 5.67983 5.86382 6.06157 6.21137 6.45747 6.76126 6.82471 7.18055 7.35999 8.24962 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.043699 B = 0.013108 C = 0.010409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.592409 B = 2135.577921 C = 2689.432317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.103 4.103 3 C -0.165 4.165 4 C 0.061 3.939 5 C -0.479 4.479 6 H 0.076 0.924 7 C 0.036 3.964 8 N -0.816 5.816 9 Si 0.985 3.015 10 H -0.262 1.262 11 H -0.264 1.264 12 H -0.260 1.260 13 C -0.036 4.036 14 O -0.501 6.501 15 C -0.138 4.138 16 C -0.022 4.022 17 O -0.499 6.499 18 H 0.075 0.925 19 H 0.069 0.931 20 H 0.056 0.944 21 H 0.113 0.887 22 H 0.292 0.708 23 H 0.375 0.625 24 H 0.119 0.881 25 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -1.333 -1.708 2.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 C -0.185 4.185 4 C 0.058 3.942 5 C -0.508 4.508 6 H 0.094 0.906 7 C -0.180 4.180 8 N -0.441 5.441 9 Si 0.805 3.195 10 H -0.186 1.186 11 H -0.188 1.188 12 H -0.184 1.184 13 C -0.082 4.082 14 O -0.309 6.309 15 C -0.157 4.157 16 C -0.067 4.067 17 O -0.309 6.309 18 H 0.093 0.907 19 H 0.088 0.912 20 H 0.075 0.925 21 H 0.131 0.869 22 H 0.103 0.897 23 H 0.229 0.771 24 H 0.137 0.863 25 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -1.879 -1.085 -1.547 2.665 hybrid contribution 0.464 0.500 0.027 0.683 sum -1.415 -0.586 -1.520 2.157 Atomic orbital electron populations 1.20555 0.90297 1.02088 1.02152 1.20023 0.97096 0.92506 1.00767 1.20769 0.93667 0.96672 1.07370 1.18293 0.92908 0.92874 0.90160 1.19627 1.01606 0.93167 1.36365 0.90605 1.26815 0.94409 1.05075 0.91702 1.69888 1.18794 1.33374 1.22040 0.85206 0.79297 0.75291 0.79668 1.18603 1.18763 1.18419 1.18427 0.82621 0.91944 1.15171 1.84669 1.16840 1.96099 1.33332 1.21293 0.93999 0.97102 1.03300 1.17686 0.88726 0.84724 1.15577 1.84713 1.75796 1.36724 1.33643 0.90683 0.91185 0.92505 0.86885 0.89707 0.77062 0.86327 0.76346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.48 9.77 71.24 0.70 -2.79 15 2 C -0.10 -4.79 5.86 -20.02 -0.12 -4.90 15 3 C -0.17 -8.66 8.25 22.45 0.19 -8.47 15 4 C 0.06 3.32 5.58 -21.18 -0.12 3.20 15 5 C -0.48 -26.02 8.71 23.35 0.20 -25.82 15 6 H 0.08 4.10 7.65 -2.91 -0.02 4.08 15 7 C 0.04 1.80 5.13 85.23 0.44 2.23 15 8 N -0.82 -41.60 10.97 21.82 0.24 -41.36 15 9 Si 0.99 37.67 29.60 68.60 2.03 39.70 15 10 H -0.26 -9.89 7.11 99.48 0.71 -9.19 15 11 H -0.26 -9.37 7.11 99.48 0.71 -8.67 15 12 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 13 C -0.04 -1.85 6.73 23.04 0.16 -1.70 15 14 O -0.50 -23.32 12.79 -89.73 -1.15 -24.47 15 15 C -0.14 -6.43 9.91 22.42 0.22 -6.21 15 16 C -0.02 -1.00 6.69 22.74 0.15 -0.84 15 17 O -0.50 -18.78 12.50 -90.04 -1.13 -19.91 15 18 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 19 H 0.07 2.41 7.51 -2.39 -0.02 2.39 15 20 H 0.06 2.08 8.07 -2.39 -0.02 2.06 15 21 H 0.11 6.08 6.17 -2.91 -0.02 6.06 15 22 H 0.29 13.38 8.30 -92.71 -0.77 12.61 15 23 H 0.38 14.18 9.06 -74.05 -0.67 13.50 15 24 H 0.12 4.95 8.06 -2.91 -0.02 4.93 15 25 H 0.38 10.48 9.06 -74.06 -0.67 9.81 15 Total: -1.00 -62.03 225.82 1.70 -60.33 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -0.11 Total: 30.99 kcal Atomic # 6 Polarization: -47.10 SS G_CDS: 1.82 Total: -45.29 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.24 Total: -41.36 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -2.27 Total: -44.37 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -62.03 1.70 -60.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213835384.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.708 kcal (2) G-P(sol) polarization free energy of solvation -62.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds