Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86804 * 120.00012 * 2 1 4 4 H 1.48497 * 109.46752 * 269.99784 * 3 2 1 5 5 H 1.48495 * 109.46972 * 29.99621 * 3 2 1 6 6 H 1.48499 * 109.47019 * 149.99898 * 3 2 1 7 7 C 1.40243 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99352 * 180.02562 * 7 2 1 9 9 C 1.39986 * 119.99940 * 0.02562 * 7 2 1 10 10 N 1.33379 * 126.07443 * 359.96737 * 9 7 2 11 11 C 1.33153 * 109.31491 * 179.97438 * 10 9 7 12 12 C 1.35197 * 108.40674 * 359.97269 * 11 10 9 13 13 N 1.36509 * 126.06737 * 179.97438 * 9 7 2 14 14 C 1.46470 * 129.71432 * 0.20522 * 13 9 7 15 15 C 1.53501 * 108.01574 * 163.56536 * 14 13 9 16 16 O 1.43152 * 109.87813 * 48.51744 * 15 14 13 17 17 C 1.43548 * 114.06562 * 289.62746 * 16 15 14 18 18 H 0.97000 * 120.00332 * 0.02562 * 1 2 3 19 19 H 1.07998 * 125.79684 * 179.97438 * 11 10 9 20 20 H 1.08996 * 109.75212 * 283.19443 * 14 13 9 21 21 H 1.09003 * 109.75279 * 43.93498 * 14 13 9 22 22 H 1.08993 * 109.40971 * 168.61509 * 15 14 13 23 23 H 1.09002 * 109.40320 * 288.46036 * 15 14 13 24 24 H 1.09002 * 109.82858 * 289.93433 * 17 16 15 25 25 H 1.09002 * 109.82487 * 169.06298 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4383 2.6527 0.6999 6 1 3.5384 1.4402 0.7001 7 6 2.0080 -1.2146 0.0005 8 1 3.0880 -1.2145 0.0010 9 6 1.3080 -2.4268 0.0005 10 7 -0.0183 -2.5679 0.0007 11 6 -0.3233 -3.8640 0.0001 12 6 0.8276 -4.5735 -0.0011 13 7 1.8617 -3.6746 0.0005 14 6 3.2712 -4.0730 0.0046 15 6 3.3459 -5.5501 0.4157 16 8 2.4068 -6.3156 -0.3469 17 6 1.0348 -6.0667 -0.0061 18 1 -0.4850 0.8400 -0.0004 19 1 -1.3207 -4.2783 0.0004 20 1 3.6926 -3.9464 -0.9926 21 1 3.8243 -3.4633 0.7191 22 1 4.3523 -5.9264 0.2331 23 1 3.1112 -5.6431 1.4761 24 1 0.8198 -6.4726 0.9824 25 1 0.3806 -6.5285 -0.7456 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213838074.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = 13.907425 kcal Electronic energy + Delta-G solvation = -12113.136897 eV Core-core repulsion = 9899.754524 eV Total energy + Delta-G solvation = -2213.382373 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.36283 -37.29870 -33.35267 -32.67662 -29.69676 -28.47664 -26.23374 -23.73333 -22.40229 -20.07048 -18.29674 -17.12554 -16.13526 -15.42081 -14.95236 -14.53461 -14.08129 -13.57585 -12.99824 -12.65026 -12.23713 -11.63407 -11.41050 -11.26190 -10.96734 -10.63477 -10.45537 -10.18590 -9.37565 -9.18913 -7.93658 -7.83040 -7.02556 -6.42639 -4.31470 3.02841 3.14281 3.17010 3.55548 3.93015 4.09617 4.43169 4.66532 5.18194 5.41399 5.58070 5.67695 5.83777 5.95410 5.98513 6.12562 6.23594 6.45373 7.02070 7.18756 7.42952 7.63592 8.11496 8.17656 8.50201 8.93302 9.29159 10.17930 10.50458 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.061230 B = 0.011822 C = 0.010051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.182715 B = 2367.882420 C = 2785.014209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.082 3.918 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.387 3.613 10 N -0.519 5.519 11 C 0.012 3.988 12 C -0.199 4.199 13 N -0.502 5.502 14 C 0.094 3.906 15 C 0.057 3.943 16 O -0.390 6.390 17 C 0.161 3.839 18 H 0.273 0.727 19 H 0.136 0.864 20 H 0.067 0.933 21 H 0.080 0.920 22 H 0.099 0.901 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -5.355 1.117 7.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.502 4.502 8 H 0.095 0.905 9 C 0.145 3.855 10 N -0.240 5.240 11 C -0.142 4.142 12 C -0.310 4.310 13 N -0.194 5.194 14 C -0.031 4.031 15 C -0.020 4.020 16 O -0.308 6.308 17 C 0.084 3.916 18 H 0.084 0.916 19 H 0.154 0.846 20 H 0.085 0.915 21 H 0.098 0.902 22 H 0.117 0.883 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.539 -4.781 0.979 6.664 hybrid contribution 0.911 0.282 0.183 0.971 sum 5.450 -4.499 1.162 7.161 Atomic orbital electron populations 1.70008 1.06939 1.27734 1.31846 1.25719 0.94784 1.00265 0.93447 0.86271 0.80085 0.80972 0.78998 1.19593 1.20206 1.18887 1.18113 0.93411 0.87633 1.51007 0.90463 1.20098 0.87543 0.83197 0.94682 1.71613 1.09962 1.13855 1.28607 1.21669 0.95303 0.91813 1.05424 1.20955 0.90083 0.91646 1.28314 1.45149 1.03983 1.06716 1.63597 1.22011 0.83421 0.95675 1.01954 1.22794 0.93564 0.90365 0.95316 1.87973 1.16286 1.63958 1.62609 1.20854 0.81528 0.90099 0.99114 0.91626 0.84629 0.91527 0.90189 0.88323 0.92908 0.93617 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.96 11.90 55.56 0.66 -20.29 15 2 C 0.08 2.18 5.50 -17.29 -0.10 2.09 15 3 Si 0.91 19.28 29.56 -169.99 -5.03 14.25 15 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 7 C -0.46 -12.81 9.17 -38.17 -0.35 -13.16 15 8 H 0.08 1.97 7.80 -52.49 -0.41 1.56 15 9 C 0.39 11.08 7.47 -156.23 -1.17 9.92 15 10 N -0.52 -15.44 9.44 -13.04 -0.12 -15.56 15 11 C 0.01 0.30 11.83 -18.06 -0.21 0.08 15 12 C -0.20 -4.74 6.74 -81.33 -0.55 -5.28 15 13 N -0.50 -12.52 3.20 -111.44 -0.36 -12.88 15 14 C 0.09 1.84 7.08 -3.80 -0.03 1.81 15 15 C 0.06 0.94 6.81 37.42 0.25 1.19 15 16 O -0.39 -7.29 10.80 -35.23 -0.38 -7.67 15 17 C 0.16 3.03 7.28 36.03 0.26 3.29 15 18 H 0.27 6.99 8.29 -40.82 -0.34 6.65 15 19 H 0.14 3.04 8.06 -52.49 -0.42 2.62 15 20 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 21 H 0.08 1.45 8.14 -51.93 -0.42 1.02 15 22 H 0.10 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.05 0.84 8.09 -51.93 -0.42 0.42 15 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.09 1.53 8.14 -51.93 -0.42 1.11 15 LS Contribution 221.04 15.07 3.33 3.33 Total: -1.00 -32.78 221.04 -6.28 -39.06 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -2.50 Total: -0.18 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.88 Total: -0.06 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.18 Total: -48.73 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.38 Total: -7.67 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -32.78 -6.28 -39.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213838074.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.969 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds