Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86804 * 120.00012 * 2 1 4 4 H 1.48497 * 109.46752 * 269.99784 * 3 2 1 5 5 H 1.48495 * 109.46972 * 29.99621 * 3 2 1 6 6 H 1.48499 * 109.47019 * 149.99898 * 3 2 1 7 7 C 1.40243 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99352 * 180.02562 * 7 2 1 9 9 C 1.39986 * 119.99940 * 0.02562 * 7 2 1 10 10 N 1.33379 * 126.07443 * 359.96737 * 9 7 2 11 11 C 1.33153 * 109.31491 * 179.97438 * 10 9 7 12 12 C 1.35197 * 108.40674 * 359.97269 * 11 10 9 13 13 N 1.36509 * 126.06737 * 179.97438 * 9 7 2 14 14 C 1.46470 * 129.71432 * 0.20522 * 13 9 7 15 15 C 1.53501 * 108.01574 * 163.56536 * 14 13 9 16 16 O 1.43152 * 109.87813 * 48.51744 * 15 14 13 17 17 C 1.43548 * 114.06562 * 289.62746 * 16 15 14 18 18 H 0.97000 * 120.00332 * 0.02562 * 1 2 3 19 19 H 1.07998 * 125.79684 * 179.97438 * 11 10 9 20 20 H 1.08996 * 109.75212 * 283.19443 * 14 13 9 21 21 H 1.09003 * 109.75279 * 43.93498 * 14 13 9 22 22 H 1.08993 * 109.40971 * 168.61509 * 15 14 13 23 23 H 1.09002 * 109.40320 * 288.46036 * 15 14 13 24 24 H 1.09002 * 109.82858 * 289.93433 * 17 16 15 25 25 H 1.09002 * 109.82487 * 169.06298 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4383 2.6527 0.6999 6 1 3.5384 1.4402 0.7001 7 6 2.0080 -1.2146 0.0005 8 1 3.0880 -1.2145 0.0010 9 6 1.3080 -2.4268 0.0005 10 7 -0.0183 -2.5679 0.0007 11 6 -0.3233 -3.8640 0.0001 12 6 0.8276 -4.5735 -0.0011 13 7 1.8617 -3.6746 0.0005 14 6 3.2712 -4.0730 0.0046 15 6 3.3459 -5.5501 0.4157 16 8 2.4068 -6.3156 -0.3469 17 6 1.0348 -6.0667 -0.0061 18 1 -0.4850 0.8400 -0.0004 19 1 -1.3207 -4.2783 0.0004 20 1 3.6926 -3.9464 -0.9926 21 1 3.8243 -3.4633 0.7191 22 1 4.3523 -5.9264 0.2331 23 1 3.1112 -5.6431 1.4761 24 1 0.8198 -6.4726 0.9824 25 1 0.3806 -6.5285 -0.7456 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213838074.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = -9.104211 kcal Electronic energy + Delta-G solvation = -12114.134757 eV Core-core repulsion = 9899.754524 eV Total energy + Delta-G solvation = -2214.380232 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.23053 -38.84389 -35.32128 -34.39457 -31.50819 -30.23988 -28.03107 -25.48174 -24.03345 -22.05610 -20.02961 -18.96927 -17.82074 -17.16927 -16.57069 -16.12911 -15.69566 -15.28461 -14.68986 -14.47326 -13.86285 -13.38159 -13.18306 -12.92784 -12.56211 -12.46171 -12.02498 -11.87842 -11.11541 -10.85088 -9.89200 -9.85927 -9.00934 -8.38046 -6.35766 1.32086 1.41649 1.57060 1.72455 2.20772 2.42731 2.66815 2.97051 3.55151 3.74809 4.09323 4.19377 4.29331 4.48971 4.55560 4.58882 4.73815 4.78944 5.10507 5.28554 5.58696 6.00190 6.18925 6.22636 6.57758 6.94112 7.31596 8.18824 8.58363 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.061230 B = 0.011822 C = 0.010051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.182715 B = 2367.882420 C = 2785.014209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.030 3.970 3 Si 0.998 3.002 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.493 4.493 8 H 0.088 0.912 9 C 0.347 3.653 10 N -0.567 5.567 11 C -0.034 4.034 12 C -0.178 4.178 13 N -0.509 5.509 14 C 0.081 3.919 15 C 0.061 3.939 16 O -0.396 6.396 17 C 0.163 3.837 18 H 0.277 0.723 19 H 0.156 0.844 20 H 0.071 0.929 21 H 0.091 0.909 22 H 0.144 0.856 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 -6.226 1.324 9.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.189 4.189 3 Si 0.817 3.183 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.532 4.532 8 H 0.106 0.894 9 C 0.103 3.897 10 N -0.289 5.289 11 C -0.186 4.186 12 C -0.291 4.291 13 N -0.200 5.200 14 C -0.042 4.042 15 C -0.016 4.016 16 O -0.314 6.314 17 C 0.086 3.914 18 H 0.088 0.912 19 H 0.174 0.826 20 H 0.089 0.911 21 H 0.109 0.891 22 H 0.162 0.838 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.359 -5.700 1.187 8.621 hybrid contribution 0.362 0.389 0.117 0.544 sum 6.721 -5.310 1.304 8.664 Atomic orbital electron populations 1.70150 1.09059 1.29073 1.33429 1.26833 0.95644 1.04217 0.92200 0.84997 0.78724 0.75248 0.79291 1.18874 1.19522 1.17555 1.18552 0.94111 0.88349 1.52236 0.89359 1.20460 0.87925 0.84922 0.96434 1.71466 1.11420 1.16232 1.29797 1.22136 0.97304 0.91261 1.07875 1.21812 0.89246 0.94108 1.23892 1.45494 1.06327 1.05978 1.62167 1.22446 0.80684 0.98300 1.02782 1.23027 0.95331 0.87846 0.95413 1.87980 1.16178 1.63966 1.63290 1.21082 0.82445 0.86417 1.01481 0.91242 0.82621 0.91124 0.89057 0.83799 0.92122 0.90922 0.86766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.31 11.90 21.88 0.26 -46.05 15 2 C 0.03 1.64 5.50 85.35 0.47 2.11 15 3 Si 1.00 39.82 29.56 68.60 2.03 41.84 15 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 15 7 C -0.49 -27.85 9.17 23.18 0.21 -27.64 15 8 H 0.09 4.54 7.80 -2.91 -0.02 4.52 15 9 C 0.35 20.34 7.47 133.81 1.00 21.34 15 10 N -0.57 -34.86 9.44 -195.18 -1.84 -36.71 15 11 C -0.03 -1.81 11.83 83.79 0.99 -0.81 15 12 C -0.18 -8.32 6.74 41.06 0.28 -8.04 15 13 N -0.51 -25.15 3.20 -506.49 -1.62 -26.77 15 14 C 0.08 3.00 7.08 86.55 0.61 3.61 15 15 C 0.06 1.76 6.81 72.15 0.49 2.25 15 16 O -0.40 -13.29 10.80 -148.98 -1.61 -14.89 15 17 C 0.16 5.60 7.28 71.25 0.52 6.12 15 18 H 0.28 14.70 8.29 -92.71 -0.77 13.93 15 19 H 0.16 7.09 8.06 -2.91 -0.02 7.07 15 20 H 0.07 2.55 8.14 -2.39 -0.02 2.53 15 21 H 0.09 3.14 8.14 -2.39 -0.02 3.12 15 22 H 0.14 2.89 8.14 -2.39 -0.02 2.87 15 23 H 0.06 1.69 8.09 -2.39 -0.02 1.67 15 24 H 0.07 2.18 8.14 -2.39 -0.02 2.16 15 25 H 0.11 3.44 8.14 -2.39 -0.02 3.42 15 Total: -1.00 -73.13 221.04 2.98 -70.15 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 1.19 Total: 13.48 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 4.57 Total: -1.06 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -3.20 Total: -109.52 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -1.61 Total: -14.89 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.84 kcal Total: -73.13 2.98 -70.15 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213838074.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.049 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds