Wall clock time and date at job start Mon Mar 30 2020 02:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31280 * 1 3 3 Si 1.86797 * 120.00073 * 2 1 4 4 H 1.48506 * 109.46999 * 239.99725 * 3 2 1 5 5 H 1.48498 * 109.47334 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47177 * 120.00363 * 3 2 1 7 7 C 1.39447 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99999 * 180.02562 * 7 2 1 9 9 C 1.41062 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.41505 * 126.77753 * 0.02571 * 9 7 2 11 11 N 1.30089 * 108.28133 * 179.74075 * 10 9 7 12 12 N 1.41416 * 109.86636 * 359.97438 * 11 10 9 13 13 C 1.37292 * 138.50929 * 179.97438 * 12 11 10 14 14 C 1.31294 * 116.42376 * 180.02562 * 13 12 11 15 15 S 1.75830 * 109.54724 * 359.97438 * 14 13 12 16 16 C 1.34271 * 107.67215 * 0.02562 * 12 11 10 17 17 H 0.96999 * 120.00218 * 0.02562 * 1 2 3 18 18 H 1.08000 * 125.85837 * 359.73870 * 10 9 7 19 19 H 1.07995 * 121.78900 * 0.02562 * 13 12 11 20 20 H 1.08007 * 125.21971 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 3.1006 1.6963 -1.2125 5 1 1.2819 2.7464 -0.0006 6 1 3.1006 1.6963 1.2124 7 6 2.0100 -1.2077 0.0005 8 1 3.0900 -1.2077 0.0010 9 6 1.3047 -2.4293 0.0005 10 6 -0.1005 -2.5963 -0.0005 11 7 -0.3599 -3.8710 -0.0057 12 7 0.8475 -4.6072 -0.0090 13 6 1.2520 -5.9191 -0.0141 14 6 2.5478 -6.1310 -0.0149 15 16 3.3957 -4.5907 -0.0097 16 6 1.8615 -3.7270 -0.0050 17 1 -0.4850 0.8400 -0.0004 18 1 -0.8320 -1.8017 0.0026 19 1 0.5425 -6.7333 -0.0172 20 1 3.0201 -7.1023 -0.0191 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213844223.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:54 Heat of formation + Delta-G solvation = 87.569601 kcal Electronic energy + Delta-G solvation = -9654.429634 eV Core-core repulsion = 7751.161269 eV Total energy + Delta-G solvation = -1903.268365 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 194.021 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.94213 -37.04967 -35.10202 -31.09908 -30.17400 -27.14011 -23.90191 -22.24901 -20.80128 -19.70672 -17.75657 -16.69096 -16.11926 -15.93632 -15.32020 -15.03507 -14.07327 -13.37314 -13.01733 -12.96687 -12.75309 -12.37314 -11.94349 -11.84867 -11.32662 -11.08990 -10.37648 -9.83134 -8.56275 -8.48851 -6.04096 0.29902 0.75709 1.28819 1.35174 1.43761 1.55966 1.69021 1.94411 2.18667 2.27103 3.33055 4.00408 4.53213 4.58005 4.88014 4.97729 5.17492 5.44268 5.81218 6.34811 6.41312 6.69955 6.94649 7.15404 8.45008 Molecular weight = 194.02amu Principal moments of inertia in cm(-1) A = 0.059644 B = 0.012720 C = 0.010523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.339635 B = 2200.725414 C = 2660.220232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.458 4.458 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.042 3.958 11 N -0.330 5.330 12 N -0.345 5.345 13 C 0.073 3.927 14 C -0.236 4.236 15 S 0.072 5.928 16 C -0.186 4.186 17 H 0.290 0.710 18 H 0.215 0.785 19 H 0.198 0.802 20 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 -4.966 -0.021 6.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.182 4.182 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.491 4.491 8 H 0.088 0.912 9 C -0.027 4.027 10 C -0.145 4.145 11 N -0.152 5.152 12 N -0.123 5.123 13 C -0.056 4.056 14 C -0.374 4.374 15 S 0.321 5.679 16 C -0.415 4.415 17 H 0.100 0.900 18 H 0.231 0.769 19 H 0.215 0.785 20 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.457 -5.379 -0.025 6.985 hybrid contribution -0.720 0.910 0.004 1.160 sum 3.737 -4.469 -0.021 5.826 Atomic orbital electron populations 1.69497 1.08391 1.30265 1.40461 1.26611 0.95812 1.04157 0.91669 0.85016 0.78325 0.75237 0.79677 1.18801 1.18929 1.18785 1.18854 0.94133 0.89938 1.46222 0.91223 1.18011 0.91561 0.90427 1.02678 1.25222 0.97732 0.92169 0.99359 1.76871 1.02872 1.06159 1.29325 1.46363 1.04584 1.04561 1.56774 1.20702 0.97353 0.84015 1.03532 1.25249 0.94275 1.03106 1.14813 1.83565 1.02681 0.96109 1.85563 1.24390 0.93143 0.95325 1.28676 0.89959 0.76942 0.78482 0.75453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.09 10.33 21.76 0.22 -43.87 14 2 C 0.03 1.42 5.49 85.07 0.47 1.88 14 3 Si 1.00 38.92 29.56 68.60 2.03 40.95 14 4 H -0.26 -10.07 7.11 99.48 0.71 -9.37 14 5 H -0.27 -9.67 7.11 99.48 0.71 -8.96 14 6 H -0.26 -10.06 7.11 99.48 0.71 -9.36 14 7 C -0.46 -25.53 9.38 23.25 0.22 -25.31 14 8 H 0.07 3.78 7.84 -2.91 -0.02 3.76 14 9 C -0.01 -0.59 5.97 -21.05 -0.13 -0.72 14 10 C 0.04 2.35 10.88 85.76 0.93 3.28 14 11 N -0.33 -17.56 12.60 -56.31 -0.71 -18.27 14 12 N -0.35 -16.89 4.28 -190.54 -0.82 -17.71 14 13 C 0.07 2.65 11.28 83.51 0.94 3.60 14 14 C -0.24 -7.33 11.15 67.49 0.75 -6.58 14 15 S 0.07 2.85 23.38 -56.49 -1.32 1.53 14 16 C -0.19 -9.66 7.93 85.05 0.67 -8.99 14 17 H 0.29 13.45 8.31 -92.71 -0.77 12.68 14 18 H 0.21 11.78 5.76 -2.91 -0.02 11.76 14 19 H 0.20 5.46 8.06 -2.91 -0.02 5.44 14 20 H 0.23 4.45 8.06 -2.91 -0.02 4.42 14 Total: -1.00 -64.36 201.57 4.53 -59.83 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.26 Total: 10.38 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 3.86 Total: -32.84 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.30 Total: -79.85 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.32 Total: 1.53 kcal Total: -64.36 4.53 -59.83 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213844223.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.395 kcal (2) G-P(sol) polarization free energy of solvation -64.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds