Wall clock time and date at job start Mon Mar 30 2020 02:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31085 * 1 3 3 Si 1.86797 * 120.00462 * 2 1 4 4 H 1.48503 * 109.46847 * 270.00025 * 3 2 1 5 5 H 1.48497 * 109.47036 * 29.99871 * 3 2 1 6 6 H 1.48499 * 109.47457 * 150.00184 * 3 2 1 7 7 C 1.39827 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99851 * 180.02562 * 7 2 1 9 9 C 1.39892 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.39436 * 126.92306 * 359.90360 * 9 7 2 11 11 N 1.32345 * 107.85153 * 179.72485 * 10 9 7 12 12 C 1.33229 * 109.97541 * 0.22763 * 11 10 9 13 13 S 1.76383 * 141.35938 * 179.97438 * 12 11 10 14 14 C 1.75762 * 90.71150 * 179.97438 * 13 12 11 15 15 C 1.31077 * 109.79313 * 0.02562 * 14 13 12 16 16 N 1.35174 * 109.53120 * 359.97438 * 12 11 10 17 17 H 0.97003 * 119.99780 * 359.97438 * 1 2 3 18 18 H 1.08001 * 126.07310 * 359.97438 * 10 9 7 19 19 H 1.07999 * 125.10060 * 180.02562 * 14 13 12 20 20 H 1.08004 * 121.85411 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2450 1.6176 0.0000 4 1 2.4925 2.0463 -1.4001 5 1 1.4425 2.6526 0.7000 6 1 3.5425 1.4400 0.7000 7 6 2.0099 -1.2110 0.0005 8 1 3.0899 -1.2110 0.0010 9 6 1.3103 -2.4224 0.0005 10 6 -0.0739 -2.5903 0.0019 11 7 -0.3250 -3.8897 -0.0047 12 6 0.8181 -4.5741 -0.0053 13 16 1.4343 -6.2268 -0.0110 14 6 3.0887 -5.6333 -0.0060 15 6 3.0900 -4.3225 0.0000 16 7 1.8603 -3.7133 0.0005 17 1 -0.4850 0.8401 0.0004 18 1 -0.8103 -1.8003 0.0036 19 1 3.9716 -6.2552 -0.0075 20 1 4.0079 -3.7534 0.0035 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213844636.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:46 Heat of formation + Delta-G solvation = 62.916775 kcal Electronic energy + Delta-G solvation = -9713.569589 eV Core-core repulsion = 7809.232197 eV Total energy + Delta-G solvation = -1904.337392 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 194.021 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.51420 -36.98115 -35.61179 -31.64532 -29.98705 -26.93359 -24.27973 -22.39761 -21.09415 -19.58758 -17.89596 -16.99698 -16.31181 -15.82444 -15.49464 -14.95059 -14.26282 -13.81938 -13.10112 -13.06779 -12.69432 -12.41927 -12.05890 -11.86878 -11.51710 -10.80976 -10.55120 -9.34701 -8.71652 -8.66095 -6.31722 0.42628 0.49261 1.15058 1.37042 1.39576 1.56580 1.83257 2.10213 2.38543 2.42511 3.19242 4.10565 4.40575 4.65513 4.78858 4.93338 5.42280 5.46596 5.80715 6.23972 6.50658 6.69460 6.80061 7.52697 8.26143 Molecular weight = 194.02amu Principal moments of inertia in cm(-1) A = 0.073976 B = 0.011636 C = 0.010090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.411431 B = 2405.662394 C = 2774.226650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.025 3.975 3 Si 1.016 2.984 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.452 4.452 8 H 0.090 0.910 9 C 0.167 3.833 10 C -0.146 4.146 11 N -0.476 5.476 12 C -0.011 4.011 13 S 0.118 5.882 14 C -0.229 4.229 15 C 0.053 3.947 16 N -0.456 5.456 17 H 0.295 0.705 18 H 0.186 0.814 19 H 0.231 0.769 20 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.491 -2.534 0.000 8.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.190 4.190 3 Si 0.835 3.165 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.177 1.177 7 C -0.486 4.486 8 H 0.108 0.892 9 C 0.056 3.944 10 C -0.297 4.297 11 N -0.198 5.198 12 C -0.368 4.368 13 S 0.362 5.638 14 C -0.367 4.367 15 C -0.075 4.075 16 N -0.144 5.144 17 H 0.106 0.894 18 H 0.203 0.797 19 H 0.247 0.753 20 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 6.922 -3.988 -0.003 7.989 hybrid contribution 1.167 2.334 -0.002 2.609 sum 8.088 -1.654 -0.004 8.256 Atomic orbital electron populations 1.69715 1.09156 1.30955 1.35126 1.26916 0.95854 1.04711 0.91509 0.84682 0.78386 0.73818 0.79620 1.18468 1.18903 1.17735 1.18870 0.95148 0.88615 1.45921 0.89237 1.19688 0.92593 0.81918 1.00159 1.23425 0.94447 0.90851 1.20956 1.69569 1.25595 1.06392 1.18259 1.25909 0.87833 0.97210 1.25858 1.83440 0.97798 0.95920 1.86610 1.25199 1.01532 0.95903 1.14036 1.20787 0.88814 0.94504 1.03375 1.43856 1.05764 1.07403 1.57351 0.89410 0.79750 0.75266 0.79277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.49 10.32 21.82 0.23 -42.27 14 2 C 0.03 1.23 5.50 85.19 0.47 1.70 14 3 Si 1.02 36.06 29.56 68.60 2.03 38.09 14 4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 14 5 H -0.26 -8.94 7.11 99.48 0.71 -8.24 14 6 H -0.25 -8.57 7.11 99.48 0.71 -7.87 14 7 C -0.45 -23.77 9.43 23.06 0.22 -23.56 14 8 H 0.09 4.30 7.84 -2.91 -0.02 4.28 14 9 C 0.17 9.53 6.97 38.47 0.27 9.80 14 10 C -0.15 -8.85 10.84 84.90 0.92 -7.93 14 11 N -0.48 -28.24 11.24 -193.24 -2.17 -30.41 14 12 C -0.01 -0.58 8.92 179.41 1.60 1.02 14 13 S 0.12 4.48 23.37 -56.49 -1.32 3.16 14 14 C -0.23 -7.04 11.12 67.70 0.75 -6.29 14 15 C 0.05 2.01 11.27 83.73 0.94 2.96 14 16 N -0.46 -23.25 3.22 -346.99 -1.12 -24.37 14 17 H 0.29 13.51 8.30 -92.71 -0.77 12.74 14 18 H 0.19 11.39 5.73 -2.91 -0.02 11.37 14 19 H 0.23 4.34 8.06 -2.91 -0.02 4.32 14 20 H 0.19 5.81 8.06 -2.91 -0.02 5.79 14 Total: -1.00 -67.95 201.06 4.08 -63.88 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 1.26 Total: 14.22 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 5.17 Total: -22.29 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -3.06 Total: -97.05 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 2.03 Total: 38.09 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.32 Total: 3.16 kcal Total: -67.95 4.08 -63.88 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213844636.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.792 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds