Wall clock time and date at job start Mon Mar 30 2020 02:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86796 * 120.00335 * 2 1 4 4 H 1.48503 * 109.46838 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47557 * 119.99688 * 3 2 1 6 6 H 1.48494 * 109.47271 * 240.00361 * 3 2 1 7 7 C 1.40074 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00114 * 355.76659 * 7 2 1 9 9 C 1.39911 * 119.99973 * 175.76775 * 7 2 1 10 10 C 1.37538 * 125.37249 * 189.61118 * 9 7 2 11 11 C 1.38541 * 114.91511 * 179.97438 * 10 9 7 12 12 C 1.35047 * 114.13137 * 0.02765 * 11 10 9 13 13 S 1.75570 * 125.37312 * 9.30692 * 9 7 2 14 14 C 1.52219 * 110.41331 * 179.97438 * 12 11 10 15 15 C 1.54175 * 104.90757 * 342.46203 * 14 12 11 16 16 C 1.52838 * 136.27125 * 180.02562 * 11 10 9 17 17 H 0.97008 * 120.00041 * 177.92041 * 1 2 3 18 18 H 1.07996 * 122.53815 * 0.02562 * 10 9 7 19 19 H 1.09006 * 110.35711 * 223.60148 * 14 12 11 20 20 H 1.09003 * 110.44091 * 101.36726 * 14 12 11 21 21 H 1.08997 * 110.93870 * 268.61855 * 15 14 12 22 22 H 1.08999 * 110.97133 * 144.93475 * 15 14 12 23 23 H 1.08999 * 110.32273 * 316.55220 * 16 11 10 24 24 H 1.08996 * 110.32012 * 78.65018 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 1.2777 2.7464 -0.0006 5 1 3.0964 1.6964 1.2125 6 1 3.0964 1.6963 -1.2125 7 6 2.0090 -1.2131 0.0005 8 1 1.4712 -2.1471 0.0700 9 6 3.4052 -1.2148 -0.0889 10 6 4.1892 -2.3277 -0.2852 11 6 5.5511 -2.0799 -0.3402 12 6 5.8822 -0.7793 -0.1903 13 16 4.4327 0.2044 0.0243 14 6 7.3925 -0.6040 -0.2638 15 6 7.9673 -2.0157 -0.0325 16 6 6.8184 -2.9127 -0.5313 17 1 -0.4850 -0.8396 -0.0305 18 1 3.7743 -3.3193 -0.3894 19 1 7.7336 0.0768 0.5162 20 1 7.6852 -0.2316 -1.2455 21 1 8.1637 -2.1877 1.0258 22 1 8.8692 -2.1715 -0.6245 23 1 6.7648 -3.8252 0.0625 24 1 6.9567 -3.1551 -1.5850 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213850336.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:40 Heat of formation + Delta-G solvation = -14.862880 kcal Electronic energy + Delta-G solvation = -9851.094901 eV Core-core repulsion = 8046.925074 eV Total energy + Delta-G solvation = -1804.169827 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.56423 -36.52705 -34.43967 -30.25244 -28.89589 -25.87858 -22.54799 -21.72478 -20.51839 -18.90752 -17.55928 -16.47123 -16.16633 -15.16650 -14.89790 -14.60446 -14.02795 -13.56494 -13.05258 -12.63838 -12.48530 -12.29917 -12.06863 -11.86568 -11.81365 -11.55667 -11.38805 -10.47933 -9.60509 -9.27928 -8.78185 -6.58484 0.59118 0.83011 1.27544 1.39094 1.44981 2.02591 2.10818 2.14454 2.94160 3.94257 4.00508 4.26992 4.58425 4.86365 4.93345 4.99543 5.11118 5.13916 5.22049 5.26623 5.43863 5.48632 5.63448 5.94531 6.10148 6.38254 6.53795 7.78674 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.068055 B = 0.013744 C = 0.011598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.335470 B = 2036.762751 C = 2413.571052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.020 3.980 3 Si 0.950 3.050 4 H -0.206 1.206 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.488 4.488 8 H 0.063 0.937 9 C 0.024 3.976 10 C -0.359 4.359 11 C -0.075 4.075 12 C -0.351 4.351 13 S -0.011 6.011 14 C -0.023 4.023 15 C -0.104 4.104 16 C -0.059 4.059 17 H 0.283 0.717 18 H 0.091 0.909 19 H 0.065 0.935 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.104 0.896 23 H 0.069 0.931 24 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.188 1.608 -0.383 11.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.197 4.197 3 Si 0.766 3.234 4 H -0.128 1.128 5 H -0.120 1.120 6 H -0.122 1.122 7 C -0.524 4.524 8 H 0.081 0.919 9 C -0.094 4.094 10 C -0.384 4.384 11 C -0.085 4.085 12 C -0.464 4.464 13 S 0.246 5.754 14 C -0.062 4.062 15 C -0.142 4.142 16 C -0.098 4.098 17 H 0.093 0.907 18 H 0.109 0.891 19 H 0.083 0.917 20 H 0.088 0.912 21 H 0.092 0.908 22 H 0.122 0.878 23 H 0.087 0.913 24 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.628 4.678 -0.161 11.613 hybrid contribution -0.664 -3.720 -0.198 3.784 sum 9.964 0.958 -0.359 10.016 Atomic orbital electron populations 1.70631 1.08009 1.32511 1.33472 1.28357 0.96056 1.05988 0.89288 0.84287 0.79373 0.74298 0.85397 1.12817 1.11996 1.12226 1.20143 0.90971 0.96282 1.44966 0.91888 1.21567 0.96145 0.94233 0.97423 1.19488 0.92728 0.97179 1.28967 1.20419 0.93697 0.95577 0.98808 1.25921 0.99391 0.96667 1.24448 1.83901 0.99966 1.11983 1.79521 1.20573 0.86303 0.98220 1.01134 1.22240 0.97180 0.92837 1.01992 1.21064 0.89909 0.97339 1.01453 0.90658 0.89076 0.91668 0.91242 0.90762 0.87808 0.91257 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.83 13.66 21.86 0.30 -44.53 14 2 C 0.02 1.10 5.52 85.28 0.47 1.57 14 3 Si 0.95 40.94 24.51 68.60 1.68 42.63 14 4 H -0.21 -8.04 7.11 99.48 0.71 -7.33 14 5 H -0.19 -7.95 6.30 97.17 0.61 -7.34 14 6 H -0.20 -8.21 6.37 98.43 0.63 -7.58 14 7 C -0.49 -28.02 9.72 23.12 0.22 -27.79 14 8 H 0.06 3.80 8.06 -2.91 -0.02 3.78 14 9 C 0.02 1.33 5.99 22.51 0.13 1.47 14 10 C -0.36 -18.99 10.19 22.18 0.23 -18.77 14 11 C -0.07 -3.41 6.49 -19.83 -0.13 -3.54 14 12 C -0.35 -15.45 7.37 25.44 0.19 -15.27 14 13 S -0.01 -0.51 15.45 -56.49 -0.87 -1.38 14 14 C -0.02 -0.74 6.80 30.73 0.21 -0.53 14 15 C -0.10 -2.78 7.10 31.35 0.22 -2.56 14 16 C -0.06 -1.95 6.80 30.90 0.21 -1.74 14 17 H 0.28 15.19 8.72 -92.70 -0.81 14.38 14 18 H 0.09 4.82 8.06 -2.91 -0.02 4.80 14 19 H 0.06 1.94 8.14 -2.38 -0.02 1.92 14 20 H 0.07 2.06 8.14 -2.39 -0.02 2.04 14 21 H 0.07 1.87 8.14 -2.39 -0.02 1.85 14 22 H 0.10 2.04 8.14 -2.39 -0.02 2.02 14 23 H 0.07 2.15 8.14 -2.39 -0.02 2.13 14 24 H 0.08 2.40 8.14 -2.39 -0.02 2.38 14 Total: -1.00 -61.23 213.05 3.84 -57.39 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.97 Total: 13.05 kcal Atomic # 6 Polarization: -68.91 SS G_CDS: 1.76 Total: -67.16 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.30 Total: -44.53 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.68 Total: 42.63 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -0.87 Total: -1.38 kcal Total: -61.23 3.84 -57.39 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213850336.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.525 kcal (2) G-P(sol) polarization free energy of solvation -61.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds