Wall clock time and date at job start Mon Mar 30 2020 02:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00228 * 2 1 4 4 H 1.48499 * 109.46883 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47062 * 299.99935 * 3 2 1 6 6 H 1.48508 * 109.46904 * 59.99807 * 3 2 1 7 7 C 1.37882 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99928 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46762 * 179.97438 * 9 7 2 11 11 C 1.46896 * 110.99706 * 179.97438 * 10 9 7 12 12 H 1.09000 * 112.83347 * 24.02708 * 11 10 9 13 13 C 1.53638 * 113.53594 * 253.03618 * 11 10 9 14 14 C 1.53572 * 87.59180 * 220.73363 * 13 11 10 15 15 H 1.08995 * 117.30318 * 144.19907 * 14 13 11 16 16 C 1.54490 * 113.33209 * 283.23986 * 14 13 11 17 17 C 1.51089 * 104.87958 * 116.18132 * 16 14 13 18 18 C 1.30488 * 111.12097 * 343.88612 * 17 16 14 19 19 C 1.51101 * 111.18766 * 359.60916 * 18 17 16 20 20 H 1.09006 * 114.94600 * 145.67207 * 19 18 17 21 21 H 0.97004 * 119.99434 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.46669 * 60.00316 * 9 7 2 23 23 H 1.09000 * 109.47019 * 300.00137 * 9 7 2 24 24 H 1.00903 * 110.99920 * 56.05066 * 10 9 7 25 25 H 1.08998 * 113.53012 * 106.05419 * 13 11 10 26 26 H 1.08999 * 113.52613 * 335.41615 * 13 11 10 27 27 H 1.09001 * 110.36973 * 235.21012 * 16 14 13 28 28 H 1.09000 * 110.37029 * 357.43073 * 16 14 13 29 29 H 1.07997 * 124.43921 * 163.77844 * 17 16 14 30 30 H 1.08002 * 124.40771 * 179.88277 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6158 0.0015 11 6 1.5053 -4.9070 0.0032 12 1 0.4966 -4.8417 -0.4048 13 6 1.5755 -5.6413 1.3509 14 6 1.7863 -6.9400 0.5589 15 1 2.4559 -7.6848 0.9889 16 6 0.4876 -7.4895 -0.0721 17 6 0.7225 -7.4232 -1.5632 18 6 1.7321 -6.6464 -1.8461 19 6 2.3349 -6.0561 -0.5926 20 1 3.4153 -5.9143 -0.6247 21 1 -0.4849 0.8401 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6246 -2.5563 0.8920 24 1 2.8410 -3.5484 0.7824 25 1 0.6391 -5.6185 1.9082 26 1 2.4356 -5.3567 1.9571 27 1 0.3192 -8.5194 0.2425 28 1 -0.3621 -6.8653 0.2044 29 1 0.1332 -7.9511 -2.2983 30 1 2.0876 -6.4476 -2.8463 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216342953.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:15 Heat of formation + Delta-G solvation = 37.027380 kcal Electronic energy + Delta-G solvation = -11798.583017 eV Core-core repulsion = 9787.462206 eV Total energy + Delta-G solvation = -2011.120811 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.46507 -34.83922 -32.74759 -31.14975 -28.24658 -26.22434 -24.28385 -22.63002 -21.32489 -18.77115 -18.31602 -16.46627 -15.88846 -14.77504 -14.65300 -13.90446 -13.31066 -12.57894 -12.55559 -12.37832 -11.85762 -11.74727 -11.25051 -10.95909 -10.90660 -10.73662 -10.50961 -10.24933 -9.97944 -9.72798 -9.19905 -8.59893 -8.45854 -7.19791 -6.01668 -4.03569 2.48209 3.31935 3.39009 3.44360 4.44485 4.57610 4.82407 4.97625 5.19799 5.34050 5.46824 5.53327 5.67817 5.75462 5.88103 5.90514 6.01236 6.03546 6.18154 6.25273 6.59555 6.73524 6.75540 7.16589 7.30261 7.46147 7.81617 8.15608 8.44406 8.64973 9.06345 9.61369 11.09409 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.073003 B = 0.007467 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.453685 B = 3748.723930 C = 3768.197701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.679 5.679 11 C 0.089 3.911 12 H 0.089 0.911 13 C -0.158 4.158 14 C -0.120 4.120 15 H 0.087 0.913 16 C -0.083 4.083 17 C -0.183 4.183 18 C -0.139 4.139 19 C -0.083 4.083 20 H 0.098 0.902 21 H 0.260 0.740 22 H 0.027 0.973 23 H -0.014 1.014 24 H 0.330 0.670 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 -12.889 0.433 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.307 5.307 11 C -0.023 4.023 12 H 0.107 0.893 13 C -0.197 4.197 14 C -0.139 4.139 15 H 0.106 0.894 16 C -0.120 4.120 17 C -0.201 4.201 18 C -0.157 4.157 19 C -0.103 4.103 20 H 0.116 0.884 21 H 0.070 0.930 22 H 0.045 0.955 23 H 0.004 0.996 24 H 0.148 0.852 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.138 0.862 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.953 -12.715 -0.256 12.866 hybrid contribution -0.017 0.906 0.771 1.190 sum 1.936 -11.808 0.516 11.977 Atomic orbital electron populations 1.69981 1.06085 1.26631 1.51063 1.25002 0.94881 0.99383 0.95375 0.86432 0.80072 0.83358 0.77494 1.19655 1.20992 1.21098 1.21254 0.93561 0.90325 1.50123 0.91930 1.19581 0.90637 0.87402 0.95675 1.60536 1.20634 1.01055 1.48520 1.22848 0.96869 0.89243 0.93320 0.89320 1.23568 1.01776 0.96323 0.98050 1.23307 0.97158 0.95819 0.97637 0.89422 1.21144 0.97345 1.00609 0.92872 1.23175 0.98895 1.01312 0.96746 1.23199 0.97251 0.96440 0.98772 1.22784 1.00176 0.96070 0.91245 0.88362 0.92996 0.95520 0.99569 0.85195 0.91831 0.90055 0.91782 0.90639 0.86240 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.84 9.32 -34.44 -0.32 -15.16 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.20 5.28 -4.97 -0.03 5.17 16 10 N -0.68 -14.95 6.60 -107.23 -0.71 -15.66 16 11 C 0.09 1.64 3.32 -67.00 -0.22 1.41 16 12 H 0.09 1.77 7.27 -51.93 -0.38 1.39 16 13 C -0.16 -2.43 7.16 -26.10 -0.19 -2.62 16 14 C -0.12 -1.64 5.36 -88.39 -0.47 -2.12 16 15 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.08 -1.06 6.00 -26.91 -0.16 -1.23 16 17 C -0.18 -2.43 10.70 -35.69 -0.38 -2.81 16 18 C -0.14 -2.03 10.25 -35.69 -0.37 -2.39 16 19 C -0.08 -1.31 4.74 -90.04 -0.43 -1.73 16 20 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.03 0.78 8.13 -51.93 -0.42 0.35 16 23 H -0.01 -0.38 8.14 -51.93 -0.42 -0.81 16 24 H 0.33 6.90 8.17 -39.29 -0.32 6.58 16 25 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 26 H 0.08 1.20 7.80 -51.93 -0.41 0.80 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.02 7.53 -51.93 -0.39 0.62 16 29 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 250.14 15.07 3.77 3.77 Total: -1.00 -30.05 250.14 -8.30 -38.36 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.42 Total: 3.07 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.66 Total: -19.98 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.03 Total: -42.13 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.05 -8.30 -38.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216342953.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.384 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds