Wall clock time and date at job start Mon Mar 30 2020 02:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00228 * 2 1 4 4 H 1.48499 * 109.46883 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47062 * 299.99935 * 3 2 1 6 6 H 1.48508 * 109.46904 * 59.99807 * 3 2 1 7 7 C 1.37882 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99928 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46762 * 179.97438 * 9 7 2 11 11 C 1.46896 * 110.99706 * 179.97438 * 10 9 7 12 12 H 1.09000 * 112.83347 * 24.02708 * 11 10 9 13 13 C 1.53638 * 113.53594 * 253.03618 * 11 10 9 14 14 C 1.53572 * 87.59180 * 220.73363 * 13 11 10 15 15 H 1.08995 * 117.30318 * 144.19907 * 14 13 11 16 16 C 1.54490 * 113.33209 * 283.23986 * 14 13 11 17 17 C 1.51089 * 104.87958 * 116.18132 * 16 14 13 18 18 C 1.30488 * 111.12097 * 343.88612 * 17 16 14 19 19 C 1.51101 * 111.18766 * 359.60916 * 18 17 16 20 20 H 1.09006 * 114.94600 * 145.67207 * 19 18 17 21 21 H 0.97004 * 119.99434 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.46669 * 60.00316 * 9 7 2 23 23 H 1.09000 * 109.47019 * 300.00137 * 9 7 2 24 24 H 1.00903 * 110.99920 * 56.05066 * 10 9 7 25 25 H 1.08998 * 113.53012 * 106.05419 * 13 11 10 26 26 H 1.08999 * 113.52613 * 335.41615 * 13 11 10 27 27 H 1.09001 * 110.36973 * 235.21012 * 16 14 13 28 28 H 1.09000 * 110.37029 * 357.43073 * 16 14 13 29 29 H 1.07997 * 124.43921 * 163.77844 * 17 16 14 30 30 H 1.08002 * 124.40771 * 179.88277 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6158 0.0015 11 6 1.5053 -4.9070 0.0032 12 1 0.4966 -4.8417 -0.4048 13 6 1.5755 -5.6413 1.3509 14 6 1.7863 -6.9400 0.5589 15 1 2.4559 -7.6848 0.9889 16 6 0.4876 -7.4895 -0.0721 17 6 0.7225 -7.4232 -1.5632 18 6 1.7321 -6.6464 -1.8461 19 6 2.3349 -6.0561 -0.5926 20 1 3.4153 -5.9143 -0.6247 21 1 -0.4849 0.8401 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6246 -2.5563 0.8920 24 1 2.8410 -3.5484 0.7824 25 1 0.6391 -5.6185 1.9082 26 1 2.4356 -5.3567 1.9571 27 1 0.3192 -8.5194 0.2425 28 1 -0.3621 -6.8653 0.2044 29 1 0.1332 -7.9511 -2.2983 30 1 2.0876 -6.4476 -2.8463 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216342953.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:14 Heat of formation + Delta-G solvation = 17.793432 kcal Electronic energy + Delta-G solvation = -11799.417064 eV Core-core repulsion = 9787.462206 eV Total energy + Delta-G solvation = -2011.954858 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.69884 -36.59694 -34.64389 -32.75985 -29.54391 -28.13431 -25.52932 -24.34156 -23.14572 -19.86882 -19.66916 -18.46210 -17.23538 -16.71691 -16.06307 -15.57610 -14.82730 -14.42557 -14.06944 -13.69232 -13.49131 -13.11465 -12.97701 -12.66897 -12.62759 -12.17667 -12.01256 -11.76385 -11.51783 -11.18898 -11.14894 -10.67708 -9.78985 -8.98578 -8.23962 -6.35921 1.37920 1.40273 1.41241 1.55386 2.39226 3.08859 3.38547 3.59114 3.70490 3.83760 4.19419 4.33779 4.42302 4.53452 4.69454 4.77765 4.81563 4.88847 4.98705 5.06424 5.14670 5.20248 5.33295 5.54689 5.62444 5.66881 6.01033 6.07765 6.47958 6.73100 6.89859 7.35502 8.87787 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.073003 B = 0.007467 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.453685 B = 3748.723930 C = 3768.197701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.211 3.789 10 N -0.680 5.680 11 C 0.071 3.929 12 H 0.065 0.935 13 C -0.152 4.152 14 C -0.102 4.102 15 H 0.114 0.886 16 C -0.087 4.087 17 C -0.168 4.168 18 C -0.168 4.168 19 C -0.083 4.083 20 H 0.098 0.902 21 H 0.265 0.735 22 H -0.007 1.007 23 H -0.040 1.040 24 H 0.337 0.663 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.142 0.858 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 -13.696 0.726 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.084 3.916 10 N -0.309 5.309 11 C -0.040 4.040 12 H 0.083 0.917 13 C -0.191 4.191 14 C -0.121 4.121 15 H 0.132 0.868 16 C -0.124 4.124 17 C -0.186 4.186 18 C -0.186 4.186 19 C -0.102 4.102 20 H 0.116 0.884 21 H 0.074 0.926 22 H 0.011 0.989 23 H -0.022 1.022 24 H 0.155 0.845 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.160 0.840 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.872 -13.554 0.039 13.855 hybrid contribution -0.361 1.101 0.669 1.337 sum 2.511 -12.454 0.708 12.724 Atomic orbital electron populations 1.70110 1.07878 1.27979 1.51521 1.26005 0.95829 1.03537 0.94485 0.85241 0.78902 0.78056 0.77821 1.18597 1.20346 1.20117 1.21608 0.93848 0.91484 1.50632 0.91702 1.19179 0.90633 0.89056 0.92774 1.60459 1.20025 1.01361 1.49039 1.23010 0.96214 0.88393 0.96406 0.91659 1.23510 1.02172 0.96863 0.96580 1.23294 0.97683 0.95298 0.95805 0.86801 1.21235 0.96561 1.02060 0.92565 1.23487 0.97744 0.99850 0.97492 1.23275 0.98757 0.97965 0.98635 1.22717 0.99733 0.94880 0.92916 0.88421 0.92586 0.98880 1.02194 0.84492 0.91855 0.89244 0.88961 0.91493 0.84009 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.98 44.98 29.54 68.60 2.03 47.01 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.54 -31.59 9.32 25.60 0.24 -31.35 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.67 16 9 C 0.21 11.82 5.28 85.56 0.45 12.27 16 10 N -0.68 -30.67 6.60 -493.18 -3.26 -33.92 16 11 C 0.07 2.63 3.32 45.38 0.15 2.79 16 12 H 0.07 2.72 7.27 -2.39 -0.02 2.70 16 13 C -0.15 -4.54 7.16 31.00 0.22 -4.32 16 14 C -0.10 -2.55 5.36 -9.35 -0.05 -2.60 16 15 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 16 C -0.09 -2.03 6.00 30.48 0.18 -1.85 16 17 C -0.17 -4.09 10.70 26.30 0.28 -3.81 16 18 C -0.17 -4.75 10.25 26.30 0.27 -4.48 16 19 C -0.08 -2.53 4.74 -10.42 -0.05 -2.58 16 20 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 21 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 22 H -0.01 -0.43 8.13 -2.39 -0.02 -0.45 16 23 H -0.04 -2.37 8.14 -2.39 -0.02 -2.39 16 24 H 0.34 14.23 8.17 -89.69 -0.73 13.50 16 25 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 26 H 0.09 2.52 7.80 -2.39 -0.02 2.50 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.71 7.53 -2.39 -0.02 1.69 16 29 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -65.07 250.14 1.59 -63.47 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.38 Total: 16.30 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 2.16 Total: -35.49 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -2.97 Total: -91.29 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -65.07 1.59 -63.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216342953.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.268 kcal (2) G-P(sol) polarization free energy of solvation -65.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds