Wall clock time and date at job start Mon Mar 30 2020 02:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35681 * 117.00204 * 2 1 4 4 C 1.38252 * 120.16993 * 0.27774 * 3 2 1 5 5 C 1.38485 * 120.32803 * 180.25868 * 4 3 2 6 6 C 1.38520 * 120.67109 * 359.76311 * 5 4 3 7 7 C 1.38207 * 120.33104 * 359.95308 * 6 5 4 8 8 O 1.35688 * 120.16960 * 180.02562 * 7 6 5 9 9 C 1.41272 * 120.17419 * 180.02562 * 3 2 1 10 10 C 1.40994 * 120.32148 * 359.97438 * 9 3 2 11 11 H 1.07996 * 119.99820 * 143.89164 * 10 9 3 12 12 C 1.39912 * 120.00175 * 323.89435 * 10 9 3 13 13 N 1.30914 * 120.00033 * 334.10309 * 12 10 9 14 14 Si 1.86795 * 119.99865 * 153.82558 * 12 10 9 15 15 H 1.48498 * 109.47295 * 180.27699 * 14 12 10 16 16 H 1.48501 * 109.47654 * 300.27740 * 14 12 10 17 17 H 1.48499 * 109.47091 * 60.27589 * 14 12 10 18 18 H 1.08999 * 109.46952 * 299.99865 * 1 2 3 19 19 H 1.08994 * 109.46793 * 59.99611 * 1 2 3 20 20 H 1.08993 * 109.47053 * 180.02562 * 1 2 3 21 21 H 1.07993 * 119.83758 * 359.97438 * 4 3 2 22 22 H 1.07995 * 119.66278 * 179.73981 * 5 4 3 23 23 H 1.08005 * 119.83485 * 179.97438 * 6 5 4 24 24 H 0.96700 * 114.00286 * 265.28978 * 8 7 6 25 25 H 0.96999 * 119.99628 * 352.80205 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 1.2956 2.3706 0.0058 5 6 1.9209 3.6063 0.0004 6 6 3.3030 3.6987 -0.0059 7 6 4.0790 2.5551 -0.0059 8 8 5.4326 2.6495 -0.0116 9 6 3.4556 1.2871 -0.0005 10 6 4.2337 0.1113 -0.0006 11 1 5.1616 0.0778 -0.5521 12 6 3.8037 -1.0122 0.7139 13 7 3.0150 -0.8674 1.7488 14 14 4.3485 -2.7193 0.1864 15 1 3.7548 -3.7316 1.0963 16 1 3.8943 -2.9765 -1.2038 17 1 5.8297 -2.8070 0.2473 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 0.2171 2.3143 0.0099 22 1 1.3249 4.5069 0.0008 23 1 3.7766 4.6694 -0.0105 24 1 5.8265 2.6021 -0.8935 25 1 2.8129 0.0201 2.0840 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238381748.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:11 Heat of formation + Delta-G solvation = -86.023177 kcal Electronic energy + Delta-G solvation = -12233.136058 eV Core-core repulsion = 9983.127618 eV Total energy + Delta-G solvation = -2250.008440 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.71978 -38.82161 -36.36272 -35.62221 -31.31339 -29.90291 -28.07188 -26.62102 -22.95078 -22.51750 -19.95473 -19.03356 -17.49558 -17.02957 -16.46112 -16.24040 -15.62307 -15.35072 -14.87516 -14.47421 -13.92351 -13.25078 -12.90958 -12.66701 -12.48223 -12.07787 -11.93282 -11.61765 -11.58632 -11.16161 -10.54261 -9.45206 -9.05425 -8.81968 -6.27681 0.70506 0.90941 1.52324 1.64462 1.80584 2.41499 2.76704 2.82420 3.36335 3.87618 4.23889 4.36447 4.44038 4.54148 4.57653 4.70198 5.05047 5.18046 5.50320 5.71254 5.84657 5.87578 6.01298 6.22111 6.52351 6.93482 7.08282 7.29134 8.19759 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.034419 B = 0.018259 C = 0.012748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.320017 B = 1533.103593 C = 2195.944597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.028 3.972 4 C -0.191 4.191 5 C -0.190 4.190 6 C -0.144 4.144 7 C -0.012 4.012 8 O -0.499 6.499 9 C 0.017 3.983 10 C -0.551 4.551 11 H 0.065 0.935 12 C 0.014 3.986 13 N -0.795 5.795 14 Si 1.113 2.887 15 H -0.272 1.272 16 H -0.268 1.268 17 H -0.264 1.264 18 H 0.045 0.955 19 H 0.056 0.944 20 H 0.103 0.897 21 H 0.129 0.871 22 H 0.135 0.865 23 H 0.124 0.876 24 H 0.377 0.623 25 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.203 1.150 -3.988 5.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C -0.017 4.017 4 C -0.210 4.210 5 C -0.209 4.209 6 C -0.163 4.163 7 C -0.057 4.057 8 O -0.308 6.308 9 C 0.013 3.987 10 C -0.579 4.579 11 H 0.084 0.916 12 C -0.203 4.203 13 N -0.417 5.417 14 Si 0.932 3.068 15 H -0.197 1.197 16 H -0.193 1.193 17 H -0.188 1.188 18 H 0.064 0.936 19 H 0.075 0.925 20 H 0.121 0.879 21 H 0.147 0.853 22 H 0.153 0.847 23 H 0.142 0.858 24 H 0.231 0.769 25 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.419 -0.587 -2.994 4.582 hybrid contribution 0.063 1.977 -0.711 2.102 sum -3.356 1.390 -3.705 5.189 Atomic orbital electron populations 1.23034 0.79428 1.03780 1.00655 1.86178 1.20704 1.26937 1.89115 1.19314 0.91839 0.84491 1.06097 1.21094 0.99330 0.92352 1.08214 1.20476 0.93520 0.96687 1.10195 1.21084 0.94310 0.96971 1.03896 1.18590 0.82528 0.91497 1.13134 1.84678 1.17258 1.95424 1.33475 1.17823 0.90208 0.94129 0.96504 1.20191 1.08332 0.98326 1.31044 0.91643 1.28017 0.92086 1.08240 0.91948 1.70495 1.25762 1.27631 1.17846 0.83049 0.77064 0.69771 0.76941 1.19663 1.19341 1.18848 0.93620 0.92522 0.87892 0.85314 0.84742 0.85817 0.76861 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.81 113.37 1.11 2.07 15 2 O -0.32 -15.68 7.33 -89.99 -0.66 -16.34 15 3 C 0.03 1.44 5.71 23.02 0.13 1.57 15 4 C -0.19 -8.41 9.02 22.33 0.20 -8.21 15 5 C -0.19 -7.86 10.03 22.40 0.22 -7.64 15 6 C -0.14 -6.38 9.96 22.33 0.22 -6.15 15 7 C -0.01 -0.61 6.73 23.02 0.15 -0.45 15 8 O -0.50 -23.55 12.92 -90.07 -1.16 -24.71 15 9 C 0.02 0.92 5.03 -21.11 -0.11 0.82 15 10 C -0.55 -31.25 8.41 23.35 0.20 -31.06 15 11 H 0.07 3.65 7.92 -2.91 -0.02 3.63 15 12 C 0.01 0.75 4.21 85.24 0.36 1.11 15 13 N -0.80 -45.11 11.89 21.83 0.26 -44.85 15 14 Si 1.11 46.42 30.00 68.60 2.06 48.48 15 15 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15 16 H -0.27 -10.67 7.11 99.48 0.71 -9.97 15 17 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 18 H 0.05 1.58 7.65 -2.39 -0.02 1.56 15 19 H 0.06 1.81 7.67 -2.39 -0.02 1.79 15 20 H 0.10 3.26 8.14 -2.39 -0.02 3.24 15 21 H 0.13 4.81 6.28 -2.91 -0.02 4.79 15 22 H 0.13 4.52 8.06 -2.91 -0.02 4.49 15 23 H 0.12 4.73 8.06 -2.91 -0.02 4.71 15 24 H 0.38 14.11 9.06 -74.06 -0.67 13.44 15 25 H 0.27 16.14 7.23 -92.71 -0.67 15.47 15 Total: -1.00 -65.63 222.45 3.63 -62.01 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.64 Total: 23.37 kcal Atomic # 6 Polarization: -50.44 SS G_CDS: 2.50 Total: -47.94 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.26 Total: -44.85 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.82 Total: -41.05 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.06 Total: 48.48 kcal Total: -65.63 3.63 -62.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238381748.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.015 kcal (2) G-P(sol) polarization free energy of solvation -65.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds